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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|109476111
Protein type: Transmembrane
Type Confidence: 0.90
Topology Confidence: 0.50
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADPGMMSLF GEDGNIFSEG LEGLGECGYP ENPVNPMGQQ MPIDQGFPSL QPSLHHPSPN  60
   61 QNQTKLTHFD HYNQYEQKMH LMDQPNRMMG SAPGNGLASP HSQYHTPPVP QVPHGGGSGG 120
  121 GQMGVYPGMQ NDRHGQSFVD GGSMWGPRAV QVPDQIRAPY QQQQPQPAPS GPPAQGHPQH 180
  181 MQQMGSYLAR GDFSMQQPQQ RMSQFSQGQE GLSQGSPFIA TSGPGGHLSH MPQQSPNIAP 240
  241 SLRHPVQQQF HHHPAALHGE SVAHSPRFSP NPPQQGAVRP QTLNFSSRSQ TVPSPTVNNS 300
  301 GQYSPYPYRN LNQGLVNSTG MNQNLGLTNS TPMNQSVPRY PNAVGFPSNS GQGLMLQQPI 360
  361 HSSGSLNQMN TQTMHPSQPQ GTYASPPPMS PMKAMSNPAG TPPPQVRPGS AGIPMDVGSY 420
  421 PNMPHPQPSH QPPGAMGIGQ RNMGPRNIQQ PRPFMGMSST PRELTGHMRP NGCPGVGLAD 480
  481 AQAIQERLIP GQQHPGQQPP FQQLPTCPPL QPHPGLHQSS PPHPHHQPWA QLHPSPQNTP 540
  541 QKVPVRQHSP SEPFLEKPVP DMTQVSGQNA QLVKSDDYLP SIEQQPQQKK KKKKNNHIAA 600
  601 GDPSKGFGKD DFPGGVDNQE LSRNSLDASQ EETKKRKRPK VKKDPKELKE PREKKEPKTP 660
  661 KAPKTPKEPK ERKAKTVTPK PKSSKKSSNK KPDSEASALK KKVNKGKTEG SENSDLDKTP 720
  721 PPSPGPEEDE DPGVQKRRSS RQVKRKRYTE DLEFKISDEE ADDADAAGRD SPSNTSQSEQ 780
  781 QESVDAEGPV VEKIMSSRLV KKQKESGEEV EVEEFYVKYK NFSYLHCQWA SVEDLEKDKR 840
  841 IQQKIKRFKS KQGQSKFLSE IEDDLFNPDY VEVDRIMDFA RSTDDRGEPV THYLVKWCSL 900
  901 PYEDSTWELR QDLDQAKIEE FEKLMSREPE TERVERPPAD DWKKSESSRE YKNNNKLREY 960
  961 QLEGVNWLLF NWYNMRNCIL ADEMGLGKTI QSITFLYEIY LKGIHGPFLV IAPLSTIPNW1020
 1021 EREFRTWTEL NVVVYHGSQA SRRTIQLYEM YFKDPQGRVI KGSYKFHAII TTFEMILTDC1080
 1081 PELRNIPWRC VVIDEAHRLK NRNCKLLEGL KMMDLEHKVL LTGTPLQNTV EELFSLLHFL1140
 1141 EPSRFPSETT FMQEFGDLKT EEQVQKLQAI LKPMMLRRLK EDVEKNLAPK EETIIEVELT1200
 1201 NIQKKYYRAI LEKNFTFLSK GGGQANVPNL LNTMMELRKC CNHPYLINGA EEKILEEFKD1260
 1261 AHNADSPDFQ LQAMIQAAGK LVLIDKLLPK LKAGGHRVLI FSQMVRCLDI LLLAEIILFV1320
 1321 RPPCCISRYP YERIDGRVRG NLRQAAIDRF SKPDSDRFVF LLCTRAGGLG INLTAADTCI1380
 1381 IFDSDWNPQN DLQAQARCHR IGQSKSVKIY RLITRNSYER EMFDKASLKL GLDKAVLQSM1440
 1441 SGRENATNGV QQLSKKEIED LLRKGAYGAL MDEEDEGSKF CEEDIDQILL RRTHTITIES1500
 1501 EGKGSTFAKA SFVASGNRTD ISLDDPNFWQ KWAKKAELDI DALNGRNNLV IDTPRVRKQT1560
 1561 RLYSAVKEDE LMEFSDLESD SEEKPCIKPR RPQDKTQGYA RSECFRVEKN LLVYGWGRWT1620
 1621 DILSHGRYKR QLTEHDVETI CRAILVYCLN HYRGDENIKS FIWDLITPTA DGQTRALLNH1680
 1681 SGLSAPVPRG RKGKKVKAQS MQPVVQDADW LASCNPDALF QEDSYKKHLK HHCNKVLLRV1740
 1741 RMLYYLRQEV IGDQAEKILE GADSSEADVW IPEPFHAEVP ADWWDKEADK SLLIGVFKHG1800
 1801 YEKYNSMRAD PALCFLERVG MPDAKAIAAE QRGTDMLADG GDGGEFDRED EDPEYKPTRA1860
 1861 PFKDEIDEFA NSPPEDKEDS MEAQSTGKHS ESNAELGQLY WPNTSSLTTR LRRLITAYQR1920
 1921 SYKRQQMRQE ALMKTDRRRR RPREEVRALE AEREAIISEK RQKWTRREEA DFYRVVSTFG1980
 1981 VIFDPVKQQF DWNQFRAFAR LDKKSDESLE KYFSCFVAMC RRVCRMPAKP EDEPPDLASL2040
 2041 IEPITEERAS RTLYRIELLR KIREQVLHHP QLSDRLKLCQ PSLDLPEWWE CGRHDRDLLV2100
 2101 GAAKHGVSRT DYHILNDPEL SFLDAHKSFA QNRGASTVPS LNTLAMGFGQ APPVIASAHA2160
 2161 HEEKVMEQAE GKAEECEHSP AKERSDGKEE EEEAGGAKDS RQECEAEASS VKGELKGVEG2220
 2221 SGDPGSKSVS EKGSEEDEEE KLEDDDKSEE SSQPEAGAVS RGKTFDEESN ASMSTARDET2280
 2281 RDGFYMEDGD PSVAQLLHER TFAFSFWPKD RVMINRLDNI CEAVLKGKWP INRRQMFDFQ2340
 2341 GLVPGYPPST VDSPLQKRSF AELSMVSQAS VSASEDITTS PQLSKDDALN LSVPRQRRRR2400
 2401 RRKVEIEAER AAKRRNLMEM VAQLRESQVV SENGQEKVVD LSKASREATS STSNFSSLTS2460
 2461 KFILPNVSTP VSDAFKTQME LLQAGLSRTP TRHVLNGSLV DGEPPMKRRR GRRKNVEGLD2520
 2521 LLFMSHKRTP LSAEDAEVTK AFEEDIETPP IRNIPSPGQL DPDTRIPVIN LEDGTRLVGE2580
 2581 EAPKNKDLVD WLKLHPMYTV DMPSYVPKNA DVLFSPFQKP KQKRHRCRNP NKLDINTLTG2640
 2641 EERVPVVNKR NGKKMGGAMA PPMKDLPRWL EENPEFAVAP DWTDIVKQSG FVPESMFDRL2700
 2701 LTGPVVRGEG ASRRGRRPKS EIARAAAAAA AVASTSGINP LLVNSLFAGM DLTSLQNLQN2760
 2761 LQSLQLAGLM GFPPGLATAA TAGGDAKGPA AVLPLMLPGM AGLPNVFGLG GLLNNPLSAA2820
 2821 TGNTTTASSQ GEPEDGTSKA EEKGNDNEDE NRDSEKSTDA VSAADSANGS VGAATAPAAL2880
 2881 PSNPLAFNPF LLSTMAPGLF YPSMFLPPGL GGLTLPGFPA LAGLQNAVGA SEEKAADKAE2940
 2941 GGPCKDGETL EGSDAEENLD KTIESSILED EVAQGEELDS LEGGDEIENN GNDE

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Created and Maintained by: Michael Riffle