YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109471427, gi...
Protein type:	Transmembrane
Type Confidence:	0.75
Topology Confidence:	0.45
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGVNGTAAAA AAGQPNVSCA CNCQRSLFPS MEITELEFVQ IVVIVVVMMV MVVMITCLLS  60
   61 HYKLSARSFI SRHSQARRRD DGGLSSEGCL WPSESTVSGG MPEPQVYAPP RPTDRLAVPP 120
  121 FVQRSRFQPT YPYLQHEIAL PPTISLSDGE EPPPYQGPCT LQLRDPEQQL ELNRESVRAP 180
  181 PNRTIFDSDL IDSSMLGGPC PPSSNSGISA TCYSSGGRME GPPPTYSEVI GHYPGSSFQQ 240
  241 HQQSNGQSSL LEGTRLHHPH IAPLENKEKE KQKGHPL

Type	Start	End	Confidence
Non-Cytoplasmic	1	37	0.45
Transmembrane Helix	38	62	0.87
Cytoplasmic	63	277	0.56