YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109469255
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	97	0.96
Transmembrane Helix	98	120	0.83
Non-Cytoplasmic	121	140	0.90
Transmembrane Helix	141	161	0.95
Cytoplasmic	162	169	0.79
Transmembrane Helix	170	193	0.87
Non-Cytoplasmic	194	199	0.68
Transmembrane Helix	200	218	0.93
Cytoplasmic	219	226	0.80
Transmembrane Helix	227	250	0.87
Non-Cytoplasmic	251	258	0.86
Transmembrane Helix	259	280	0.89
Cytoplasmic	281	318	0.96
Transmembrane Helix	319	338	0.87
Non-Cytoplasmic	339	358	0.77
Transmembrane Helix	359	380	0.86
Cytoplasmic	381	389	0.83
Transmembrane Helix	390	413	0.90
Non-Cytoplasmic	414	495	0.97
Transmembrane Helix	496	523	0.82
Cytoplasmic	524	534	0.86
Transmembrane Helix	535	555	0.89
Non-Cytoplasmic	556	562	0.65
Transmembrane Helix	563	585	0.90
Cytoplasmic	586	628	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVPPHNLFTF NRALPFPKFF VYLRERSATF GQKLLTLRLP PEACSGRAGR RGGGRAQALA  60
   61 LGKVYPPRLQ RGFDQDVQGP EPSPPAQRYS LAMGLGPTVL PLCASVSLLG GLTFGYELAV 120
  121 ISGALLPLQL DFGLSCLEQE LLVGSLLLGA FLASLVGGFL IDCYGRRRAI LGSNVVLLAG 180
  181 SLILGLAGSL PWLLLGRSSV GFAISLSSMA CCIYVSELVG PRQRGVLVSL YEVGITVGIL 240
  241 FSYGLNYVLA GRPWGWRHMF GWAAAPALLQ SLSLFFLPAG AEGTAARQDL IPLQGGETSK 300
  301 LGLVKAQYTF LDLFRAQDGM WSRTVVGLGL VLFQQLTGQP NVLYYASTIF RSVGFHGGSS 360
  361 AVLASVGLGT VKVVATLIAT GLVDRVGRRA LLLSGCALMA LSVSGIGLVS FAVSLDSGPS 420
  421 CLATSNTSQQ VDLPQTPGLL VRTSLPPVLH TSGDQGQPVR SVTERPIHPV ITASLGPALN 480
  481 IDSSVPTSPI PEHTLLCWSA LVCMMVYVSA FSFGFGPVTW LVLSEIYPVE IRGRAFAFCS 540
  541 SFNWAANLFI SLSFLDLIGA IGLAWTFLLY GLTAVLGLAF IYLLVPETKG QSLAEIEQQF 600
  601 QMRRFPLSFG HRQHSGIQYR RLEVSSAS