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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|109469167
Protein type: Transmembrane
Type Confidence: 0.87
Topology Confidence: 0.64
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEELNAATAQ PALHRSGLLF MLSSAEPPTP IAPPELLAVG ATYLWIKPNA NSIIGDGPII  60
   61 LKEVEYRTTT GTWAETHIVD SPNYKLWHLD PDVEYEIRVL LTRPGEGGTG PPGPPLTTRT 120
  121 KCADPVHGPQ NVEIVDIRAR QLTLQWEPFG YAVTRCHSYN LTVQYQYVFN QQQYEAEEVI 180
  181 QTSSHYTLRG LRPFMTIRLR LLLSNPEGRM ESEELVVQTE EDVPGAVPLE SIQGGPFEEK 240
  241 IYIQWKPPNE TNGVITLYEI NYKAVGSLDP SADLSSQRGK VFKLRNETHH LFVGLYPGTT 300
  301 YSFTIKASTA KGFGPPVTTR IATKISAPSM PEYDADSPLN ETDTTITVML KPAQSRGAPV 360
  361 SVYQLVVKEE RLQKSRRAAD IIECFSVPVS YRNASNLDSL HYFAAELKPS NLPVTQPFTV 420
  421 GDNKTYNGYW NPPLSPLKSY SIYFQALSKA NGETKINCVR LATKGASTQN SNTVEPEKQV 480
  481 DNTVKMAGVI AGLLMFIIIL LGVMLTIKRR KLAKKQKETQ SGAQREMGPV ASTDKPTTKL 540
  541 STNRNDEGFS SSSQDVNGFN GSRGELSQPT LTIQTHPYRT CDPVEMSYPR DQFQPAIRVA 600
  601 DLLQHITQMK RGQGYGFKEE YEALPEGQTA SWDTAKEDEN RNKNRYGNII SYDHSRVRLL 660
  661 VLDGDPHSDY INANYIDGYH RPRHYIATQG PMQETVKDFW RMIWQENSAS IVMVTNLVEV 720
  721 GRHPAEHTVG TATLGRAASP GMVKCVRYWP DDTEVYGDIK VTLIETEPLA EYVIRTFTVQ 780
  781 KKGYHEIREL RLFHFTSWPD HGVPCYATGL LGFVRQVKFL NPPEAGPIVV HCSAGAGRTG 840
  841 CFIAIDTMLD MAENEGVVDI FNCVRELRAQ RVNLVQTEEQ YVFVHDAILE ACLCGNTAIP 900
  901 VCEFRSLYYN ISRLDPQTNS SQIKDEFQTL NIVTPRVRPE DCSIGLLPRN HDKNRSMDVL 960
  961 PLDRCLPFLI SVDGESSNYI NAALMDSHKQ PAAFVVTQHP LPNTVADFWR LVFDYNCSSV1020
 1021 VMLNEMDTAQ LCMQYWPEKT SGCYGPIQVE FVSADIDEDI IHRIFRICNM ARPQDGYRIV1080
 1081 QHLQYIGWPA YRDTPPSKRS LLKAVRRLEK WQEEYDGREG RTVVHCLNGG GRSGTFCAIC1140
 1141 SVCEMIQQQN IIDVFHIVKT LRNNKSNMVE TLEQYKFVYE VALEYLSSF

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle