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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|109475486
Protein type: Transmembrane
Type Confidence: 0.70
Topology Confidence: 0.14
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVPLHSFQYP ETYASTGVVE LQFVLKERVQ EKQEYRVGRG QEGDFSHHPL PTACPPGFYK  60
   61 VSPRRPLCSP CPEHSLALEN ASTFCVCQDT YARSPTDPPS ASCTRPPSAP RDLQYSLSRS 120
  121 PLALRLRWLP PEDSGGRSDV TYSLLCLRCG RDGPAGACQP CGPRVAFVPR QAGLRERAAT 180
  181 LLHLRPGARY TVRVAALNGV SGPAAAAGAT YAQVTVSTGP GAPWEEDEIR RDRVEPQSVS 240
  241 LSWREPVPAG ASGTNRTEYE IRYYEKGQSE QTYSTVKTGA PAVTVTNLKP ATRYVFQIRA 300
  301 ASPGPSWEAQ SFSPSIEVQT PGEVAPGSRD QSPAVVVTVV TISALLVLGS VMSVLAIWRR 360
  361 PCDGKGSGNA HDEEELYFHF KVPTRRTFLD PQSCGDPLQA VHLFAKELDA KSVTLEKSLG 420
  421 AGRFGDLCCG CLQLPGRQEL PVAVHTLREG CSDSQKLSFL AEALTLGQFD HSHIVRLEGV 480
  481 VTRGNPLMIV TEYMNLGALD DFLRHHEAEL VTAQLMGLLP GLASAMKYLS EMGYVHRGLA 540
  541 ARRVLLSSGL ICKISGFGRG PRDRAEAVYT TMSGRSPALW AAPETLQFGH FSSASDVWSF 600
  601 GIVMWEVMAF GERPYWDMSG QDVIKAVEDG FRLPPPRNCP SQLHRLMLEC WQKDPGERPR 660
  661 FSQIHSILSK MGQEPEPSKC ASTTCLRPPT PLADRAFSAF PSFGSVGAWL EALDLCRYKD 720
  721 NFSAAGYGSL EAVTEMTAQD LGSLGISSAE HREALLSGIS ALQTRVLQLQ GQGVQV

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle