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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|109474645
Protein type: Transmembrane
Type Confidence: 0.90
Topology Confidence: 0.50
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADPGMMSLF GEDGNIFSEG LEGLGECGYP ENPVNPMGQQ MPIDQGFPSL QPSLHHPSPN  60
   61 QNQTKLTHFD HYNQYEQKMH LMDQPNRMMG SAPGNGLASP HSQYHTPPVP QVPHGGGSGG 120
  121 GQMGVYPGMQ NDRHGQSFVD GGSMWGPRAV QVPDQIRAPY QQQQPQPAPS GPPAQGHPQH 180
  181 MQQMGSYLAR GDFSMQQPQQ RMSQFSQGQE GLSQGSPFIA TSGPGGHLSH MPQQSPNIAP 240
  241 SLRHPVQQQF HHHPAALHGE SVAHSPRFSP NPPQQGAVRP QTLNFSSRSQ TVPSPTVNNS 300
  301 GQYSPYPYRN LNQGLVNSTG MNQNLGLTNS TPMNQSVPRY PNAVGFPSNS GQGLMLQQPI 360
  361 HSSGSLNQMN TQTMHPSQPQ GTYASPPPMS PMKAMSNPAG TPPPQVRPGS AGIPMDVGSY 420
  421 PNMPHPQPSH QPPGAMGIGQ RNMGPRNIQQ PRPFMGMSST PRELTGHMRP NGCPGVGLAD 480
  481 AQAIQERLIP GQQHPGQQPP FQQLPTCPPL QPHPGLHQSS PPHPHHQPWA QLHPSPQNTP 540
  541 QKVPVRQHSP SEPFLEKPVP DMTQVSGQNA QLVKSDDYLP SIEQQPQQKK KKKKNNHIAA 600
  601 GDPSKGFGKD DFPGGVDNQE LSRNSLDASQ EETKKRKRPK VKKDPKELKE PREKKEPKTP 660
  661 KAPKTPKEPK ERKAKTVTPK PKSSKKSSNK KPDSEASALK KKVNKGKTEG SENSDLDKTP 720
  721 PPSPGPEEDE DPGVQKRRSS RQVKRKRYTE DLEFKISDEE ADDADAAGRD SPSNTSQSEQ 780
  781 QESVDAEGPV VEKIMSSRLV KKQKESGEEV EVEEFYVKYK NFSYLHCQWA SVEDLEKDKR 840
  841 IQQKIKRFKS KQGQSKFLSE IEDDLFNPDY VEVDRIMDFA RSTDDRGEPV THYLVKWCSL 900
  901 PYEDSTWELR QDLDQAKIEE FEKLMSREPE TERVERPPAD DWKKSESSRE YKNNNKLREY 960
  961 QLEGVNWLLF NWYNMRNCIL ADEMGLGKTI QSITFLYEIY LKGIHGPFLV IAPLSTIPNW1020
 1021 EREFRTWTEL NVVVYHGSQA SRRTIQLYEM YFKDPQGRVI KGSYKFHAII TTFEMILTDC1080
 1081 PELRNIPWRC VVIDEAHRLK NRNCKLLEGL KMMDLEHKVL LTGTPLQNTV EELFSLLHFL1140
 1141 EPSRFPSETT FMQEFGDLKT EEQVQKLQAI LKPMMLRRLK EDVEKNLAPK EETIIEVELT1200
 1201 NIQKKYYRAI LEKNFTFLSK GGGQANVPNL LNTMMELRKC CNHPYLINGA EEKILEEFKD1260
 1261 AHNADSPDFQ LQAMIQAAGK LVLIDKLLPK LKAGGHRVLI FSQMVRCLDI LEDYLIQRRY1320
 1321 PYERIDGRVR GNLRQAAIDR FSKPDSDRFV FLLCTRAGGL GINLTAADTC IIFDSDWNPQ1380
 1381 NDLQAQARCH RIGQSKSVKI YRLITRNSYE REMFDKASLK LGLDKAVLQS MSGRENATNG1440
 1441 VQQLSKKEIE DLLRKGAYGA LMDEEDEGSK FCEEDIDQIL LRRTHTITIE SEGKGSTFAK1500
 1501 ASFVASGNRT DISLDDPNFW QKWAKKAELD IDALNGRNNL VIDTPRVRKQ TRLYSAVKED1560
 1561 ELMEFSDLES DSEEKPCIKP RRPQDKTQGY ARSECFRVEK NLLVYGWGRW TDILSHGRYK1620
 1621 RQLTEHDVET ICRAILVYCL NHYRGDENIK SFIWDLITPT ADGQTRALLN HSGLSAPVPR1680
 1681 GRKGKKVKAQ SMQPVVQDAD WLASCNPDAL FQEDSYKKHL KHHCNKVLLR VRMLYYLRQE1740
 1741 VIGDQAEKIL EGADSSEADV WIPEPFHAEV PADWWDKEAD KSLLIGVFKH GYEKYNSMRA1800
 1801 DPALCFLERV GMPDAKAIAA EQRGTDMLAD GGDGGEFDRE DEDPEYKPTR APFKDEIDEF1860
 1861 ANSPPEDKED SMEAQSTGKH SESNAELGQL YWPNTSSLTT RLRRLITAYQ RSYKRQQMRQ1920
 1921 EALMKTDRRR RRPREEVRAL EAEREAIISE KRQKWTRREE ADFYRVVSTF GVIFDPVKQQ1980
 1981 FDWNQFRAFA RLDKKSDESL EKYFSCFVAM CRRVCRMPAK PEDEPPDLAS LIEPITEERA2040
 2041 SRTLYRIELL RKIREQVLHH PQLSDRLKLC QPSLDLPEWW ECGRHDRDLL VGAAKHGVSR2100
 2101 TDYHILNDPE LSFLDAHKSF AQNRGASTVP SLNTLAMGFG QAPPVIASAH AHEEKVMEQA2160
 2161 EGKAEECEHS PAKERSDGKE EEEEAGGAKD SRQECEAEAS SVKGELKGVE GSGDPGSKSV2220
 2221 SEKGSEEDEE EKLEDDDKSE ESSQPEAGAV SRGKTFDEES NASMSTARDE TRDGFYMEDG2280
 2281 DPSVAQLLHE RTFAFSFWPK DRVMINRLDN ICEAVLKGKW PINRRQMFDF QGLVPGYPPS2340
 2341 TVDSPLQKRS FAELSMVSQA SVSASEDITT SPQLSKDDAL NLSVPRQRRR RRRKVEIEAE2400
 2401 RAAKRRNLME MVAQLRESQV VSENGQEKVV DLSKASREAT SSTSNFSSLT SKFILPNVST2460
 2461 PVSDAFKTQM ELLQAGLSRT PTRHVLNGSL VDGEPPMKRR RGRRKNVEGL DLLFMSHKRT2520
 2521 PLSAEDAEVT KAFEEDIETP PIRNIPSPGQ LDPDTRIPVI NLEDGTRLVG EEAPKNKDLV2580
 2581 DWLKLHPMYT VDMPSYVPKN ADVLFSPFQK PKQKRHRCRN PNKLDINTLT GEERVPVVNK2640
 2641 RNGKKMGGAM APPMKDLPRW LEENPEFAVA PDWTDIVKQS GFVPESMFDR LLTGPVVRGE2700
 2701 GASRRGRRPK SEIARAAAAA AAVASTSGIN PLLVNSLFAG MDLTSLQNLQ NLQSLQLAGL2760
 2761 MGFPPGLATA ATAGGDAKGP AAVLPLMLPG MAGLPNVFGL GGLLNNPLSA ATGNTTTASS2820
 2821 QGEPEDGTSK AEEKGNDNED ENRDSEKSTD AVSAADSANG SVGAATAPAA LPSNPLAFNP2880
 2881 FLLSTMAPGL FYPSMFLPPG LGGLTLPGFP ALAGLQNAVG ASEEKAADKA EGGPCKDGET2940
 2941 LEGSDAEENL DKTIESSILE DEVAQGEELD SLEGGDEIEN NGNDE

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