YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|157823857, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGRKPGPGAQ ELAEEEARTC CGCRFPLLLA LLQLALGIAV TVLGFLMASI SPSLLVRDTP  60
   61 FWAGIIVCVV AYLGLFMLCV SYQVDERTCV QFSMKVFYFL LSALGLMVCT LAVAFAAHHY 120
  121 SLLAQFTCET SLDSCQCRLP SAEPLSRAFV YRDVTDCSSI TGTFKLFLVI QMVLNLVCGL 180
  181 VCLLACFVMW KHRYQVFYVG VGLRSLMASD GQQQKA

Type	Start	End	Confidence
Cytoplasmic	1	26	0.93
Transmembrane Helix	27	50	0.85
Non-Cytoplasmic	51	60	0.82
Transmembrane Helix	61	82	0.94
Cytoplasmic	83	95	0.90
Transmembrane Helix	96	117	0.95
Non-Cytoplasmic	118	167	0.96
Transmembrane Helix	168	190	0.91
Cytoplasmic	191	216	0.96