YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109472829, gi...
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 XTKVSSRERP SLRVSALRTP SGRLVAPAAR PCVRAAAALR RGRPGTEGSS SLPAPAALVV  60
   61 AVAVVVVVVS AVAWAMANYI HVPPGSPEVP KLDVTVQDQE EQRCRDGALS LLQHLRPHWD 120
  121 PREVTLQLFT DGITNKLIAC YVGDTMDDVV LVRIYGNKTE LLVDRDEEVK SFRVLQAHGC 180
  181 APQLYCTFNN GLCYEFIQGE ALDPQHVCNP AIFRLIARQL AKIHAIHAHN GWIPKSNLWL 240
  241 KMGKYFSLIP TGFADEDINK RFLSEIPSPQ LLQEEMTWMK EILSSLGSPV VLCHNDLLCK 300
  301 NIIYNEKQGD VQFIDYEYSG YNYLAYDIGN HFNEFAGVSD VDYSLYPDRE LQGQWLRSYL 360
  361 EAYKEYKGFG SDVTEKEVET LFIQVNQFAL ASHFFWGLWA LIQAKYSTIE FDFLGYAIVR 420
  421 FNQYFKMKPE VTALKMPE

Type	Start	End	Confidence
Cytoplasmic	1	55	0.84
Transmembrane Helix	56	77	0.90
Non-Cytoplasmic	78	438	0.90