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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|149036938, gi...
Protein type: Transmembrane
Type Confidence: 0.66
Topology Confidence: 0.58
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASERRKVKY HWGSTSEGCP SKRSRPREPR NVAPSSRPGR RFASRPRGAS SPQRLKVRRG  60
   61 DDVARAPRSS ARRRTSSSSS LSSLSSGSGA GGAASPGFLS ASPRRLLTSK GSSLHPAHSS 120
  121 LEEMASLRKE ACSVKVDSKD SSCRSTNSEF STEAEGQSDA MEEPSKFQKR KKDRLQDQGS 180
  181 RMIYLKAIQG ILGKSMPKRK GEAATTQGKA GLGEYSNQEG PIKKVEGPAR SVEGPTRSQE 240
  241 ELVKSIEEGP VGKVTVTVPQ KEESHTKVRV EKEESTLDRN SFCDRRVIVD SVKKTSEELL 300
  301 GDRRTVIDKP SPALEIFDNS DSHEGVQKHT DREVVMEYPS SGSDWSDVDE LATVRFSQEE 360
  361 PVSLKYSAVP ESSSFPTDYV MYPPHLYSSP WCDYASYWTS SHKTPGYPLV ESSSRDSAQA 420
  421 EKSSQDRLSV HSSKSTVSTQ SISKGLDISH KSRSQNSHSL QFSRSIEEKE VKGKRAFQEE 480
  481 TPLHHTREHT SSSLPRSHRE LSLEEGFIDT HCHLDMLYSK LSFKGTFTKF RKMYSSSFPK 540
  541 EFQGCISDFC DPRTLTDGLW EELLKEDLVW GAFGCHPHFA RYYNESQERK LLHALRHPKA 600
  601 VAFGEMGLDY SHKCTTPVPE QHQVFERQLQ LAVSLKKPLV IHCREADEDL LDIMKKFVPS 660
  661 DYKIHRHCFT GSYSVIEPLL KYFPNMSVGF TAVVTYSSAW KARDAIRQIP LERIIVETDA 720
  721 PYFLPRQVPR SLCQYAHPGL ALHTVREIAR VKEESLSHTL SVLRENTSRL YSL

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle