YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CMLO3_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPYHIRKYQ DSDHRSVVNL FCRGTEEHIS ASFRYMLLLP GTLLILLGVP LTLFLASGSW  60
   61 LLVLLSTLTL LVSLWLLAKY PWEKYTAMCL HSDMADIPRT YLSSHYSCFW VAESRGQMVG 120
  121 IIAVLPVKDP LLQRKQLQLR HLSVSLEHRR EGIGRAMVRT ALQFAEMQGF SEVVLVTSML 180
  181 QYAALALYQS MGFQKTGEFF YTFVSRLRNS PMICLKYCLT SALNDLKT

Type	Start	End	Confidence
Cytoplasmic	1	32	0.96
Transmembrane Helix	33	54	0.89
Non-Cytoplasmic	55	59	0.68
Transmembrane Helix	60	78	0.94
Cytoplasmic	79	228	0.80