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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|109473741
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.87
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLCCLLARAS NLPNVKKDRR SDPVASLIFR GVKKRTKVIK NSVNPVWNEG FEWDLKGIPL  60
   61 DQSSELLVVV KDHETMGRNR FLGEAKIPLQ EVLATPSLSA SFNAPLLDSK QQPTGASLVL 120
  121 QVSYTPPPGA APLFPPPASL APSPTLPDMD LVADTGGEED TEDQGLTGDE AELFPDPSVA 180
  181 VGPGGPTTPK KPPSHPPPHY PGGKRKRSSA PPRKLLSDKP QDFQIRVQVI EGRQLPGVNI 240
  241 KPVVKVTAAG QTKRTRIQKG NSPLFNETLF FNVFDSPLEL FDEPIFITVV DSRSLRTDAL 300
  301 LGEFRMDVGT VYREPRHAYL RKWLLLSDPD DFSAGARGYL KASLCVLGPG DEAPLDKKDP 360
  361 SEDKEDIEGN LLRPTGVALR GAHFCLKLFR AEDLPQMDDA VMDNVKQIFG FDSNKKNLVD 420
  421 PFVEVSFAGK MLCSKILEKT ANPQWNQNIT LPAMFPSMCE KMRIRVMDWD RLTHNDTVAT 480
  481 TYLGMSKISA TGGEIEVDDN LGFLPTFGPC YVNLYGSPRE FTGFPDPYAE LNTGKGEGVA 540
  541 YRGRLLLSLE TKLVEHSEQK VEDLPADDIL RVEKYLRRRK YSLFAAFYSA TMLQDVDDAI 600
  601 QFEVSIGNYG NKFDTTCLPL ASTTQYSRAV FDGCHYYYLP WGNVKPVVVL SSYWEDISHR 660
  661 VETQNQLLRI ADRLEANLEQ VHLALKAQCS SEDVDALVAQ LTDELLADCS QPLCDIHEIP 720
  721 SATHLDQYLF RLRSRHLSQI KEAALALKLG HSELSTALEQ AEDWLLHLRA LAEEPQNSLP 780
  781 DIIIWMLQGD KRVAYQRVPA HEVLFSRRGP SYCGRNCGNL QTIFLKYPME GMPGPRMPVQ 840
  841 IRIKLWFGLS VDEKEFNQFA EGKLSVFAET YENQTKLALV GNWGTTGLTY PKFSDVTGKI 900
  901 KLPKDSFRPS AGWAWAGDWF VCPEKTLLHD ADAGHLSFVE EVFENQTRLP GGQWIYMSDN 960
  961 YTDVNGEKVL PKDDIECPLG WKWEDEEWST DLNRAVDEQG WEYSITIPPD RKPKHWVPVE1020
 1021 KMYYTHRRRR WVRLRRRDLS QMEALKKHRQ AEAEGEGWEY ASLFGWKFHL EYRKTDAFRR1080
 1081 RRWRRRMEPL EKTGPAAVFA LEGALGGMVD DKSEDSMSVS TLSFGVNRPT ISCIFDYGNR1140
 1141 YHLRCYLYQA RDLPAMDKDS FSDPYAIVSF LHQSQKTVVE KNTLNPTWDQ TLIFYEIEIF1200
 1201 GEPASVAERP PSIVVELYDH DTYGADEFMG RCICQPSLER MPRLAWFPLT RGSQPAGELL1260
 1261 AAFELIQREK PAIHHIPGFE MHETSRILDE TEDTDLPYPP PQREANIYMV PQNIKPALQR1320
 1321 TAIEILAWGL RNIKSYQMAS VSSPSLVVEC GGQTVQSCVI RNLRKNPNFD VCTLFMEVML1380
 1381 PREDLYCPPI VVKVIDNRQF GRRPVVGQCT IRSLENFLCD PYSAESPSPQ GGPDDVSLLS1440
 1441 PGEDVLIDID DKEPLIPVQE EEFIDWWSKF FASIGEREKC GSYLEKDFDT LKVYDTQLEN1500
 1501 VEAFGGLSDF CNTFKLYRGK TQEDTEDPSV IGEFKGLFKI YPLPEDPAIP MPPRQFHQLA1560
 1561 AQGPQECLVR IYIIRAFGLQ PKDPNGKCDP YIKISIGKKS VSDQDNYIPC TLEPVFGKMF1620
 1621 ELTCTLPLEK DLKITLYDYD LLSKDEKIGE TVIDLENRLL SKFGARCGLP QTYCVSGPNQ1680
 1681 WRDQLRPSQL LHLFCQQHRV KAPVYRTDRV TFQDKEYTIQ EIEAGRLPNP HLGPVEERLA1740
 1741 LHVLQQQGLV PEHVESRPLY SPLQPDIEQG KLQMWIDIFP KVLGRPGPPF NITPRKARRF1800
 1801 FLRCIIWNTK DVILDDLSLT GEKMSDIYVK GWMVGFEEHK QKTDVHYRSL GGEGNFNWRF1860
 1861 VFPFDYLPAE QVCAVAKKDA FWRLDKTESK IPARVVFQIW DNDKFSFDDF LGSLQLDLNR1920
 1921 MPKPAKTAEK CSLDQLDDTF HPEWFVSLFE QKTVKGWWPC VTEEGAKKIL AGKLEMTLEI1980
 1981 VAESEHEERP AGQGRDEPNM NPKLEDPRRP DTSFLWFTSP YKTMKFILWR RFRCAIILFI2040
 2041 ILFILLLFLG VFVYAFPNYA AMKLVKPFR

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle