YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|109473554
Protein type: Transmembrane
Type Confidence: 0.65
Topology Confidence: 0.59
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVKPSSGASV NVGSVEEYVQ SPPNNYNFFL LLCPSGFRAE SAVADAASAR ACGKCGCARL  60
   61 RPDCAISSCT GRAARRFRSR PAHRLGGVLM PCLLPTLLRA TRAALLLQSP RVVAAPASQR 120
  121 LLSAPAQPAA SPSSMDSAEE LLAPLRLAVR QQGDFVRKLK EDKAPQVDVD RAVAELKARK 180
  181 RVLEAKELAL QPKDDIVDRA KMEDTLKRRF FYDQAFAIYG GVSGLYDFGP VGCALKNNII 240
  241 QTWRQHFIQE EQILEIDCTM LTPEPVLKTS GHVDKFADFM VKDVKNGECF RADHLLKAHL 300
  301 QKLMSDKKCS AEKKSEMESV LAQLDNYGQQ ELADLFVNYN VKSPTTGNDL SPPVPFNLMF 360
  361 QTFIGPGGNM PGYLRPETAQ GIFLNFKRLL EFNQGKLPFA AAQIGNSFRN EISPRSGLIR 420
  421 VREFTMAEIE HFVDPTEKDH PKFPSVADLY LYLYSAKAQV TGQSARKMRL GDAVEQGVIN 480
  481 NSVLGYFIGR IYLYLTKVGI SPDKLRFRQH MENEMAHYAC DCWDAESKTS YGWIEIVGCA 540
  541 DRSCYDLSCH ARATKVPLVA EKPLKEPKTV NVVQFEPNKG AVGKAYKKDA KLVLEYLGAC 600
  601 DECYITEMEL LLSEKGEFTI ETEGKTFQLT KDMVSVKRFQ KTLHVEEVVP SVIEPSFGLG 660
  661 RIMYTILEHT FHVREGDEQR TFFSFPAVVA PFKCSVLPLS QNQEFMPFVK ELSEALTRNG 720
  721 VSHKVDDSSG SIGRRYARTD EIGVAFGITI DFDTVNKTPH TATLRDRDSM RQIRAEVSEL 780
  781 PSVVRDLANG NITWADVEAR YPLFEGQETG KKETVEE

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle