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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|109471581, gi...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.53
Topology Confidence: 0.52
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVRRMGWGGS RRQRGRWGDL GPSSVPLLPM ALPLPASPCR GLGGGRISVF SLSPAPRTRS  60
   61 CSSSLFPPTS GSPSLVIQEA GASQPPFNAL PTPATPPTQA LPTMTHTSAS PSWGSHSTPP 120
  121 LASVTPPPSC RCPQDHPGLR IGPLIPEQDY ERLEDCDPEG SQDSSSPVHG EDHQPLLHVP 180
  181 EGLRGSWHHI QNLDSFFTKI YSYHQRNGFA CILLEDVFQL GQFIFIVTFT TFLLRCVDYN 240
  241 VLFNNQPKNH TRPGPLHSKV TLSDAILPSA QCAEKIHGSP LLVFLLVLAA GFWLFQLLRS 300
  301 VCNLFSYWDI QVFYREALHI PPEELSSVPW AEVQSRLLEL QRSGGLCVQP RPLTELDVHH 360
  361 RILRYTNYQV ALANKGLLPA RCPLPWGGSA AFLSRGLALN VDLLLFRGPF SLFRGGWELP 420
  421 EAYKRSDLRG VLATRWRRTV LLLAAVNLAL SPLVLAWQVL HAFYSHVELL RREPGAFGAR 480
  481 RWSRLARLQL RHFNELPHEL RARLGRAYRP ATAFLRAAEP PAPLRALLAR QLVFFSGALF 540
  541 AALLVLTIYD EDVLAVEHVL TTMTALGVTA TVARSFIPEE QCQGRSSQLL LQAALAHMHY 600
  601 LPEEPGAAGA RTSSYWQMSQ LLQYRAVSLL EELLSPLLTP LFLLFWFRPR ALQIIDFFHH 660
  661 FTVDVAGVGD ICSFALMDVK RHGHPQWLSE GQTEASLSQR AEDGKTELSL MRFSLAHPQW 720
  721 QPPGHSSKFL GHLRGRVQQD AAAWGAPSTR SPPTPGVLSD CTSPLPEAFL ANLLVSPRPP 780
  781 QRDLSPTAPC PAAATASLLA SISRMAQDPS CVSPGGTGGQ KLTQLPELVS AEMSLHAIYL 840
  841 HQLHQQQQQE VWGEASASSP SRPWSSPSQP GSPDEEKPSW SSDGSSPASS PRQQWGTQRA 900
  901 QNLFPKDFQE TTDAQKEPLP GSLH

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle