YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109471546, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	20	0.93
Transmembrane Helix	21	40	0.93
Cytoplasmic	41	60	0.91
Transmembrane Helix	61	83	0.92
Non-Cytoplasmic	84	107	0.90
Transmembrane Helix	108	131	0.92
Cytoplasmic	132	149	0.93
Transmembrane Helix	150	172	0.91
Non-Cytoplasmic	173	189	0.95
Transmembrane Helix	190	213	0.89
Cytoplasmic	214	291	0.98
Transmembrane Helix	292	317	0.86
Non-Cytoplasmic	318	344	0.86
Transmembrane Helix	345	369	0.85
Cytoplasmic	370	386	0.86
Transmembrane Helix	387	408	0.89
Non-Cytoplasmic	409	427	0.86
Transmembrane Helix	428	447	0.94
Cytoplasmic	448	490	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEGQDEVSAR EQHFHSQVRE STICFLLFAI LYVLSYFIIT RYKRKSDEQE DEDAVVNRIS  60
   61 LFLSTFTLAV SAGAVLLLPF SIISNEILLA FPQNYYIQWL NGSLIHGLWN LASLFSNLCL 120
  121 FVLMPFAFFF LESEGFAGLK KGIRARILET LVMLLLLALL ILGIVWVASA LIDSDAASME 180
  181 SLYDLWEFYL PYLYSCISLM GCLLLLLCTP VGLSRMFTVM GQLLVKPAIL EDLDEQIYMI 240
  241 TLEEEALQRR LHGLSSSAEY NVMELEQELE NVKTLKTKLE RRKKASAWER NLVYPAVMVL 300
  301 LLIETSISVL LVACNILCLL VDETAMPKGT RGPGIGSASL STFGFVGAAL EIILIFYLMV 360
  361 SSVVGFYSLR VFGNFTPKKD DTTMTKIIGN CVSILVLSSA LPVMSRTLGI TRFDLLGDFG 420
  421 RFNWLGNFYI VLSYNLLFAI VTTLCLIRKF TSAVREELFK ALGLHKLHLS DTSRDSETTK 480
  481 PSANGHQKAL