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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|109473230
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.78
Topology Confidence: 0.51
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKAMPWNWTC LLSHLLVVGM GSSTLLPRQP PQMSQKPSFV TFRGEPTEGF NHLVVDERTG  60
   61 HIYLGAVNRI YKLSSDLKVL VTHQTGPDED NPKCYPPRIV QTCNEPLAST NNVNKMLLID 120
  121 YKENRLIACG SLYQGICKLL RLEDLFKLGE PFHKKEHYLS GVNESGSVFG VIVSYSNFDD 180
  181 KLFIATAVDG KPEYFPTISS RKLTKNSEAD GMFAYVFHDE FVASMIKIPS DTFTVIPDFD 240
  241 IYYVYGFSSG NFVYFLTLQP EMVSPPGSTT KEQVYTSKLV RLCKEDTAFN SYVEVPIGCE 300
  301 RSGVEYRLLQ AAYLSKAGAV LGRTLGVRPD DDLLFTVFSK GQKRKMKSLD ESALCVFILK 360
  361 QINDRIKDRL QSCYRGEGTL DLAWLKVKDI PCSSALLTID DNFCGLDMNA PLGVSEMVRG 420
  421 IPVFTEDRDR MTSVIAYVYK NHSLAFVGTK SGKLKKVSID LCPPGGRQIL AYETVQVVDS 480
  481 GPVLRDMAFS KDHEQLYIMS ERQLTRVPVE SCGQYRSCGE CLGSGDPHCG WCVLHNTCTR 540
  541 KERCERSREP RRFASEMKQC VRLTVHPNNI SVSQYNVLLV LETYNVPELS AGVNCTFEDL 600
  601 SEMDGLVIGN QIQCYSPAAK EVPRIITENG DHHVVQLQLK SKETGMTFAS TSFVFYNCSV 660
  661 HNSCLSCVES PYRCHWCKYR HVCTHDPKTC SFQEGRVKLP EDCPQLLRVD KILVPVEVIK 720
  721 PITLKAKNLP QPQSGQRGYE CILNIQGMEQ RVPALRFNSS SVQCQNTSYS YEGMEINNLP 780
  781 VELTVVWNGH FNIDNPAQNK VYLYKCGAMR ESCGLCLKAD PDFECGWCQS PGQCTLRQHC 840
  841 PAHESRWLEL SGANSKCTNP RITEIIPVTG PREGGTKVTI RGENLGLEFR DIASHVKVAG 900
  901 VECIPLVDGY IPAEQIVCEM GEAKPSQHAG FVEICVAVCR PEFMARSSQL YYFMTLTLAD 960
  961 LKPNRGPMSG GTQVTITGTN LNAGSNVVVM FGSQPCLFHR RSPSYIICNT TSSEEVLDMK1020
 1021 VTVQVDRARI RQDLVFQYVE DPTIVRIEPE WSIVSGNTPI AVWGTHLDLI QNPQIRAKHG1080
 1081 GKEHINICEV LNATEMTCQA PALALGPDHQ SDLTERPEEF GFILDNVQSL LILNKTNFTY1140
 1141 YPNPVFEAFS PSGILELKPG TPIILKGKNL IPPVAGGNVK LNYTVLVGEK PCTVTVSDVQ1200
 1201 LLCESPNLIG RHKVMARVGG MEYSPGMVYI APDSPLSLPA IVSIAVAGGL LIIFIVAVLI1260
 1261 AYKRKSRESD LTLKRLQMQM DNLESRVALE CKEAFAELQT DIHELTSDLD GAGIPFLDYR1320
 1321 TYTMRVLFPG IEDHPVLRDL EVPGYRQERV EKGLKLFAQL INNKVFLLSF IRTLESQRSF1380
 1381 SMRDRGNVAS LIMTVLQSKL EYATDVLKQL LADLIDKNLE SKNHPKLLLR RTESVAEKML1440
 1441 TNWFTFLLYK FLKECAGEPL FSLFCAIKQQ MEKGPIDAIT GEARYSLSED KLIRQQIEYK1500
 1501 TLVLSCVSPD NANSPEVPVK ILNCDTITQV KEKILDAIFK NVPCSHRPKA ADMDLEWRQG1560
 1561 SGARMILQDE DITTKIENDW KRLNTVAHYQ VPDGSLVALV SKQVTAYNAV NNSTVSRTSA1620
 1621 SKYENMIRYT GSPDSLRSRT PMITPDLESG VKLWHLVKNH EHGDQKEGDR GSKMVSEIYL1680
 1681 TRLLATKGTL QKFVDDLFET IFSTAHRGSA LPLAIKYMFD FLDEQADKHG IHDPHVRHTW1740
 1741 KSNCLPLRFW VNMIKNPQFV FDIHKNSITD ACLSVVAQTF MDSCSTSEHR LGKDSPSNKL1800
 1801 LYAKDIPSYK NWVERYYSDI GKMPAISDQD MNAYLAEQSR MHMNEFNTMS ALSEIFSYVG1860
 1861 KYSEEILGPL DHDDQCGKQK LAYKLEQVIT LMSLDS

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