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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|109472514
Protein type: Transmembrane
Type Confidence: 0.96
Topology Confidence: 0.23
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAGPIRNGQ QRPRTAGRGP GRGPGAWPRA KGRGPSGWDR DGLWAWPPRS RPRAERRARV  60
   61 GPGRRGRGRQ ARAGSPRGPG PPPASRRLRA PGSRPRRAPC TRRAAQPALA WMAPRAAGGA 120
  121 PPSARAAAAV PLPPRSHSRC PGLLPLPLLL LLGAARAGAL EIQRRFPSPT PTNNFALDGT 180
  181 AGTVYLAAVN RLYQLSGANL SLEAEATVGP VPDSPLCHAP QLPQASCEHP RRLTDNYNKI 240
  241 LQLDPGQGLV VACGSIYQGL CQLRRRGNIS ALAVSFPPAA PTAEPVTVFP SMLNVAANHP 300
  301 NASTVGLVLP PASGTGGSRL LVGATYTGYG SAFFPRNRSL EDHRFENTPE ISIRSLDARG 360
  361 DLAKLFTFDL NPSDDNILKI KQGAKEQHKL GFVRAFLHPA VPPHSAHPYA YLALNSEARA 420
  421 GDKDSQARSL LARICLPRGA GGDAKKLTES YIQLGLQCAG GAGRGDLYSR LVSVFPAREQ 480
  481 FFAVFERPQG TPGARNAPAA LCAFRFADVQ AAIRAARTAC FVEPAPDVVA VLDSVVQGTG 540
  541 PACESKRNIQ LQPEQLDCGA AHLQHPLTIL QPLRASPVFR APGLTAVAVA NANNYTAVFL 600
  601 GTATGRLLKI SLNESMQVVS RRVLTVAYGE PVHHVMQFDP MDPGYLYLMT SHQMARVKVA 660
  661 ACEVHSTCGD CVGAADAYCG WCTLETRCTF KQDCANSSLP HFWTSASEGP SRCPAMTVLP 720
  721 SEIDVHRDYT GMILQISGSL PSLSGMEMAC DYGNGVRTVA RVPGPAYGHQ IAYCNLLPRA 780
  781 QFPPFPAGQD HVTVEMSVRV KGHNIVSANF TIYDCSRIGQ VYPHTACTSC LSTQWPCSWC 840
  841 IQLHSCVSNQ SRCQDSPNPT SPQDCPQIVP SPLAPVPTGG SQDILVPLTK AAFFHGTSLQ 900
  901 CSFGLEENFE AVWANDSLVR CNQVVLHTTQ KSQVFPLSLK LKGPPDRFLD SPNPMTVVVY 960
  961 NCAMGSPDCS QCLGREDLGH LCVWNDGCRL RGPLQPLSGT CPAPEIRAIE PLSGPLNGGT1020
 1021 LLTIRGKNLG RRLSDVAHGV WIGNVACEPL ADRYTVSEEI VCATGPAPGA FSDVVTVNVS1080
 1081 KEGRSREQFS YVLPRVHSLE PSMGPKAGGT RITIHGSDLN VGSMLQVLVN DTDPCTDLTR1140
 1141 TATSITCTVP RGTLPSPVPV CVRFESRGCV HGNLTFWYMQ NPVITAISPG RSPVSGGRTI1200
 1201 TVAGERFHMV QNVSMAVHHI GREPTFCKVL NSTLIICPSP GALSNASAPV DFFINGRAYA1260
 1261 DEAAEELLDP AEAQRGSRFR LDYLPNPQFS TAKREKWIKH HPGEPLTLVI HKEQDSLGLE1320
 1321 SHEYHIKIGQ VSCDIQIISD RVIHCSVNES LGTAEGQLPI TIQVGNFNQT IATLQLGGSE1380
 1381 TAIVVSIVIC SVLLLLSVVA LFVFCTKSRR AERYWQKTLL QMEEMESQIR EEIRKGFAEL1440
 1441 QTDMTDLTKE LNRSQGIPFL EYKHFVTRTF FPKCSSLYEE RYVLPSKTLN SQGGSPPQET1500
 1501 HPLLGEWNIP EHCRPSMEEG ISLFSSLLNN KHFLIVFVHA LEQQKDFAVR DRCSLASLLT1560
 1561 IALHGKLEYY TSIMKELLVD LIDASAAKNP KLMLRRTESV VEKMLTNWMS ICMYGCLRET1620
 1621 VGEPFFLLLC AIKQQINKGS IDAITGKARY TLNEEWLLRE NIEAKPRNLN VSFQGCGMDS1680
 1681 LSVRAMDTDT LTQVKEKILE AFCKNVPYSQ WPRAEDVDLE WFASSTQSYV LRDLDDTSVV1740
 1741 EDGRKKLNTL AHYKIPEGAS LAMSLTDKKD NTLGRVKDLD TEKYFHLVLP TDELVEPKKS1800
 1801 HRQSHRKKVL PEIYLTRLLS TKGTLQKFLD DLFKAILSIR EDKPPLAVKY FFDFLEEQAE1860
 1861 KRGISDPDTL HIWKTNSLPL RFWVNILKNP QFVFDIEKTD HIDACLSVIA QAFIDACSIS1920
 1921 DLQLGKDSPT NKLLYAKEIP EYRKIVQRYY KQIQDMTPLS EQEMNAHLAE ESRKYQNEFN1980
 1981 TNVAMAEIYK YAKRYRPQIM AALEANPTAR RTQLQYKFEQ VVALMENNIY ECYSEA

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle