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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|109472275
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.84
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLRVFILFAE NVHTPDSDIS DAYCSAVFAG QKRQTAIYNS SARREVGTKG EEAMLCCLLA  60
   61 RASNLPNVKK DRRSDPVASL IFRDVASLVL QVSYTPPPGA APLFPPPASL APSPTLPDMD 120
  121 LVADTGGEED TEDQGLTGDE AELFPDPSVA VGPGGPTTPK KPPSHPPPHY PGGKRKRSSA 180
  181 PPRKLLSDKP QDFQIRVQVI EGRQLPGVNI KPVVKVTAAG QTKRTRIQKG NSPLFNETLF 240
  241 FNVFDSPLEL FDEPIFITVV DSRSLRTDAL LGEFRMDVGT VYREPRHAYL RKWLLLSDPD 300
  301 DFSAGARGYL KASLCVLGPG DEAPLDKKDP SEDKEDIEGN LLRPTGVALR GAHFCLKLFR 360
  361 AEDLPQMDDA VMDNVKQIFG FDSNKKNLVD PFVEVSFAGK MLCSKILEKT ANPQWNQNIT 420
  421 LPAMFPSMCE KMRIRVMDWD RLTHNDTVAT TYLGMSKISA TGGEIEEEPA GVLKSPATDL 480
  481 DDNLGFLPTF GPCYVNLYGS PREFTGFPDP YAELNTGKGE GVAYRGRLLL SLETKLVEHS 540
  541 EQKVEDLPAD DILRVEKYLR RRKYSLFAAF YSATMLQDVD DAIQFEVSIG NYGNKFDTTC 600
  601 LPLASTTQYS RAVFDGCHYY YLPWGNVKPV VVLSSYWEDI SHRVETQNQL LRIADRLEAN 660
  661 LEQVHLALKA QCSSEDVDAL VAQLTDELLA DCSQPLCDIH EIPSATHLDQ YLFRLRSRHL 720
  721 SQIKEAALAL KLGHSELSTA LEQAEDWLLH LRALAEEPQN SLPDIIIWML QGDKRVAYQR 780
  781 VPAHEVLFSR RGPSYCGRNC GNLQTIFLKY PMEGMPGPRM PVQIRIKLWF GLSVDEKEFN 840
  841 QFAEGKLSVF AETYENQTKL ALVGNWGTTG LTYPKFSDVT GKIKLPKDSF RPSAGWAWAG 900
  901 DWFVCPEKTL LHDADAGHLS FVEEVFENQT RLPGGQWIYM SDNYTDVNGE KVLPKDDIEC 960
  961 PLGWKWEDEE WSTDLNRAVD EQGWEYSITI PPDRKPKHWV PVEKMYYTHR RRRWVRLRRR1020
 1021 DLSQMEALKK HRQAEAEGEG WEYASLFGWK FHLEYRKTDA FRRRRWRRRM EPLEKTGPAA1080
 1081 VFALEGALGG MVDDKSEDSM SVSTLSFGVN RPTISCIFDY GNRYHLRCYL YQARDLPAMD1140
 1141 KDSFSDPYAI VSFLHQSQKT VVEKNTLNPT WDQTLIFYEI EIFGEPASVA ERPPSIVVEL1200
 1201 YDHDTYGADE FMGRCICQPS LERMPRLAWF PLTRGSQPAG ELLAAFELIQ REKPAIHHIP1260
 1261 GFEMHETSRI LDETEDTDLP YPPPQREANI YMVPQNIKPA LQRTAIEILA WGLRNIKSYQ1320
 1321 MASVSSPSLV VECGGQTVQS CVIRNLRKNP NFDVCTLFME VMLPREDLYC PPIVVKVIDN1380
 1381 RQFGRRPVVG QCTIRSLENF LCDPYSAESP SPQGGPDDVS LLSPGEDVLI DIDDKEPLIP1440
 1441 VQEEEFIDWW SKFFASIGER EKCGSYLEKD FDTLKVYDTQ LENVEAFGGL SDFCNTFKLY1500
 1501 RGKTQEDTED PSVIGEFKGL FKIYPLPEDP AIPMPPRQFH QLAAQGPQEC LVRIYIIRAF1560
 1561 GLQPKDPNGK CDPYIKISIG KKSVSDQDNY IPCTLEPVFG KMFELTCTLP LEKDLKITLY1620
 1621 DYDLLSKDEK IGETVIDLEN RLLSKFGARC GLPQTYCVSG PNQWRDQLRP SQLLHLFCQQ1680
 1681 HRVKAPVYRT DRVTFQDKEY TIQEIEAGRL PNPHLGPVEE RLALHVLQQQ GLVPEHVESR1740
 1741 PLYSPLQPDI EQGKLQMWID IFPKVLGRPG PPFNITPRKA RRFFLRCIIW NTKDVILDDL1800
 1801 SLTGEKMSDI YVKGWMVGFE EHKQKTDVHY RSLGGEGNFN WRFVFPFDYL PAEQVCAVAK1860
 1861 KDAFWRLDKT ESKIPARVVF QIWDNDKFSF DDFLGSLQLD LNRMPKPAKT AEKCSLDQLD1920
 1921 DTFHPEWFVS LFEQKTVKGW WPCVTEEGAK KILAGKLEMT LEIVAESEHE ERPAGQGRDE1980
 1981 PNMNPKLEDP RRPDTSFLWF TSPYKTMKFI LWRRFRCAII LFIILFILLL FLGVFVYAFP2040
 2041 NLVAAMSLNY AAMKLVKPFR 

YRC Informatics Platform - Version 3.0
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