YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109471911
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	158	0.81
Transmembrane Helix	159	176	0.76
Non-Cytoplasmic	177	191	0.78
Transmembrane Helix	192	212	0.88
Cytoplasmic	213	224	0.72
Transmembrane Helix	225	245	0.94
Non-Cytoplasmic	246	250	0.75
Transmembrane Helix	251	272	0.86
Cytoplasmic	273	304	0.91
Transmembrane Helix	305	326	0.83
Non-Cytoplasmic	327	352	0.81
Transmembrane Helix	353	374	0.91
Cytoplasmic	375	394	0.92
Transmembrane Helix	395	419	0.88
Non-Cytoplasmic	420	456	0.95
Transmembrane Helix	457	479	0.90
Cytoplasmic	480	499	0.92
Transmembrane Helix	500	521	0.74
Non-Cytoplasmic	522	539	0.70
Transmembrane Helix	540	560	0.87
Cytoplasmic	561	570	0.51
Transmembrane Helix	571	593	0.86
Non-Cytoplasmic	594	602	0.66
Transmembrane Helix	603	622	0.91
Cytoplasmic	623	637	0.70
Transmembrane Helix	638	657	0.88
Non-Cytoplasmic	658	747	0.71

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPGSPLQSSS SPFSLESILE CQHHRQSPTL GSGSPKFEKE KSYLDRSRQQ SRLQSLYATG  60
   61 QAVILLDFSN TARVGCLLED STACSSCVPQ GPETPRGHVS WNDLILTLVV ALIPPTTPET 120
  121 RGDGALSSHT EDQGKTKDRQ QKDFSSSHLA YGILDRPPWY LCIFLGIQGG CTSALGNGEA 180
  181 ASSILCPPPS VLLSQHFLTA LGGLVAVPLI LAKDLCLQHD PLTQSYLIST IFFVSGICTL 240
  241 LQVLLGVRLP ILQGGTFAFV APSLAMLSLP AWKCPEWTLN ASLVNTSSPE FTEEWQKRIR 300
  301 ELQGAVMVAS CIQMLVGFSG LIGYLMRFIG PLTIAPTISL VALPLFDSAS NDAGTHWGIS 360
  361 ALTIFLIVLF SQYLKNVMVP VPVYGGGKRC HISKFNLFQV FPVLLALCLS WLFCFVLTVT 420
  421 NTFPESPTAY GYMARTDTKG SVLSQAPWFR FPYPGQWGLP TISLAGVFGI IAGVISSMVE 480
  481 SVGDYHACAR LVGAPPPPKH AINRGIGIEG LGCLLAGAWG TGNGTTSYSE NVGALGITRV 540
  541 GSRMVIVAAG CVLLLMGMFG KIGAAFATIP TPVIGGMFLV MFGIISAVGI SNLQYVDMNS 600
  601 SRNLFVFGFS IFCGLAVPNW VNKNPEKLQT GILQLDQVIQ VLLTTGMFVG GFLGFVLDNT 660
  661 IPGSLEERGL LAWGEIQEDS EETPKASKVY GLPWGIGTKF CTSSCTRILP FWPRIDHHGD 720
  721 EVGASQLTLC SQTSSGKHPW SVTETKM