YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ARM10_RAT
Protein type:	Transmembrane
Type Confidence:	0.80
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGGARDVGWV AAGLVLGAGA CYCIYRLTRG PRRGGRRLRP SRSAEDLTEG SYDAILSAEQ  60
   61 LEKLLYLLES TDDPIITEKA LVTLGNNAAF STNQAIIREL GGIPIVGSKI NSLNQSIKEK 120
  121 ALNALNNLSV NVENQTKIKI YVRQVCEDVF ADPLNSAVQL AALRLLTNMT VTNDYQHLLS 180
  181 NYITGLLHLL LIGNGSTKVQ VLKLLLNLSE NPAMTEGLLS AQVDSSFLSL YDGQMANEIL 240
  241 LRALTLFQNI NNCLRVEGRL ANQLPFAKGS LFFLLYGEEC AQKMKALACH PDVDVKEKAL 300
  301 AIKPKF

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.73
Transmembrane Helix	7	28	0.74
Cytoplasmic	29	306	0.70