YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109471345
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	77	0.94
Transmembrane Helix	78	100	0.83
Non-Cytoplasmic	101	120	0.91
Transmembrane Helix	121	141	0.94
Cytoplasmic	142	149	0.78
Transmembrane Helix	150	173	0.87
Non-Cytoplasmic	174	179	0.68
Transmembrane Helix	180	199	0.92
Cytoplasmic	200	206	0.85
Transmembrane Helix	207	230	0.86
Non-Cytoplasmic	231	238	0.85
Transmembrane Helix	239	260	0.89
Cytoplasmic	261	298	0.96
Transmembrane Helix	299	318	0.87
Non-Cytoplasmic	319	338	0.77
Transmembrane Helix	339	360	0.86
Cytoplasmic	361	369	0.83
Transmembrane Helix	370	393	0.90
Non-Cytoplasmic	394	475	0.97
Transmembrane Helix	476	503	0.82
Cytoplasmic	504	514	0.86
Transmembrane Helix	515	535	0.89
Non-Cytoplasmic	536	542	0.65
Transmembrane Helix	543	565	0.90
Cytoplasmic	566	608	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVPPHNLFTF NRALPFPKFF VYLRSGRAGR RGGGRAQALA LGKVYPPRLQ RGFDQDVQGP  60
   61 EPSPPAQRYS LAMGLGPTVL PLCASVSLLG GLTFGYELAV ISGALLPLQL DFRLSCLEQE 120
  121 LLVGSLLLGA FLASLVGGFL IDCYGRRRAI LGSNVVLLAG SLILGLAGSL PWLLLGRSSV 180
  181 GFAISLSSMA CCIYVSELVG PRQRGVLVSL YEVGITVGIL FSYGLNYVLA GSPWGWRHMF 240
  241 GWAAAPALLQ SLSLFFLPAG AEGTAARQDL IPLQGGETSK LGLVKAQYTF LDLFRAQDGM 300
  301 WSRTVVGLGL VLFQQLTGQP NVLYYASTIF RSVGFHGGSS AVLASVGLGT VKVVATLIAT 360
  361 GLVDRVGRRA LLLSGCALMA LSVSGIGLVS FAVSLDSGPS CLATSNTSQQ VDLPQTPGLL 420
  421 VRTSLPPVLH TSGDQGQPVR SVTERPIHPV ITASLGPALN IDSSVPTSPI PEHTLLCWSA 480
  481 LVCMMVYVSA FSFGFGPVTW LVLSEIYPVE IRGRAFAFCS SFNWAANLFI SLSFLDLIGA 540
  541 IGLAWTFLLY GLTAVLGLAF IYLLVPETKG QSLAEIEQQF QMRRFPLSFG HRQHSGIQYR 600
  601 RLEVSSAS