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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|109471246
Protein type: Transmembrane
Type Confidence: 0.81
Topology Confidence: 0.20
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRALLDASGE LAYSSEVGGV DTKRKGTTSG CSFDEHYSNC GYSVALGTNG FTWEQINTWE  60
   61 KPMLDPAVPT GSFMMVNSSG RASGQKAHLL LPTLKENDTH CIDFHYYFSS RDRSSPGALN 120
  121 VYVKVNGGPQ GNPVWNVSGV VTEGWVKAEL AISTFWPHFY QVIFESVSLK GHPGYIAVDE 180
  181 VRVLAHPCRK APHFLRLQNV EVNVGQNATF QCIAGGKWSQ HDKLWLQQWN GRDTALMVTR 240
  241 VVNHRRFSAT VSVADTSQRS VSKYRCVIRS DGGSGVSNYA ELIVKEPPTP IAPPELLAVG 300
  301 ATYLWIKPNA NSIIGDGPII LKEVEYRTTT GTWAETHIVD SPNYKLWHLD PDVEYEIRVL 360
  361 LTRPGEGGTG PPGPPLTTRT KCADPXHIPQ NPKLIAKMYC KLFLAWDPFG YTVWFCHTFG 420
  421 ILVTHSYDPR TQEAEAGKLV EGTQDYTARL RNRMTLRLRV LTTDPAGRMD SEQETEQTRH 480
  481 RIPGAVPLES IQGGPFEEKI YIQWKPPNET NGVITLYEIN YKAVGSLDPS ADLSSQRGKV 540
  541 FKLRNETHHL FVGLYPGTTY SFTIKASTAK GFGPPVTTRI ATKISAPSMP EYDADSPLNE 600
  601 TDTTITVMLK PAQSRGAPVS VYQLVVKEER LQKSRRAADI IECFSVPVSY RNASNLDSLH 660
  661 YFAAELKPSN LPVTQPFTVG DNKTYNGYWN PPLSPLKSYS IYFQALSKAN GETKINCVRL 720
  721 ATKAPMGSAQ VTPGTPLCLL TTGASTQNSN TVEPEKQVDN TVKMAGVIAG LLMFIIILLG 780
  781 VMLTIKRRRN AYSYSYYLXV SSRKLAKKQK ETQSGAQREM GPVASTDKPT TKLSTNRNDE 840
  841 GFSSSSQDVN GFTDGSRGEL SQPTLTIQTH PYRTCDPVEM SYPRDQFQPA IRVADLLQHI 900
  901 TQMKRGQGYG FKEEYEALPE GQTASWDTAK EDENRNKNRY GNIISYDHSR VRLLVLDGDP 960
  961 HSDYINANYI DGYHRPRHYI ATQGPMQETV KDFWRMIWQE NSASIVMVTN LVEVGRVKCV1020
 1021 RYWPDDTEVY GDIKVTLIET EPLAEYVIRT FTVQKKGYHE IRELRLFHFT SWPDHGVPCY1080
 1081 ATGLLGFVRQ VKFLNPPEAG PIVVHCSAGA GRTGCFIAID TMLDMAENEG VVDIFNCVRE1140
 1141 LRAQRVNLVQ TEEQYVFVHD AILEACLCGN TAIPVCEFRS LYYNISRLDP QTNSSQIKDE1200
 1201 FQTLNIVTPR VRPEDCSIGL LPRNHDKNRS MDVLPLDRCL PFLISVDGES SNYINAALMD1260
 1261 SHKQPAAFVV TQHPLPNTVA DFWRLVFDYN CSSVVMLNEM DTAQLCMQYW PEKTSGCYGP1320
 1321 IQVEFVSADI DEDIIHRIFR ICNMARPQDG YRIVQHLQYI GWPAYRDTPP SKRSLLKAVR1380
 1381 RLEKWQEEYD GREGRTVVHC LNGGGRSGTF CAICSVCEMI QQQNIIDVFH IVKTLRNNKS1440
 1441 NMVETLEQYK FVYEVALEYL SSF

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle