YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|109470919
Protein type: Transmembrane
Type Confidence: 0.98
Topology Confidence: 0.89
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDIYDTQTLG VVVFGGFMVV SAIGIFLVST FSMKETSYEE ALANQRKEMA KTHHQKGEKK  60
   61 KKEKTVEKKG KTKKKEEKPN GKIPEHDLDP NVTIILKEPM RVPAVAVAPT SVHSSVGRTP 120
  121 VATVPAMPQE KLASSPKDKK KKEKKVAKVE PAVSSIVNSI QVLASKSAIL EASPKEVPMV 180
  181 AVPPVGSKAS APATSSQGKK GQGAQNQAKK GEGAQNQAKK GEGVQNQAKK GEGAQNQAKK 240
  241 GEGAQNQAKK GEGTQNQAKK GEGAQNQGKK GEGAQNQAKK GEGAQNQAKK GEGAQNQAKK 300
  301 GEGAQNQAKK GEGGQNQAKK GEGAQNQAKK GEGAQNQAKK GEGVQNQAKK GVEGAQNQGK 360
  361 KGEANQNQAK KGEGGQNQTK KGEGLQNQGK KGEATQKQDK KIEGAQNQGK KPEGTPNQGK 420
  421 KGEGAQNQGK KGEGAQNQGK KGEGAQNQGK KGEGAQNQGK KGEGAQNQGK KGEGAQNQGK 480
  481 KGEGAQNQGK KGEGAQNQGK KGEGSPSQNI KAAQNQGKKA EGNQGKKGDG NPNQGKKGEG 540
  541 APNQNRKTDT VANQGTKTEG VSNQGKKAEG APNQGKKVEG SPNQAKKVDA AAGQGKKSEM 600
  601 TPAQGKNASM VQSQEAPKQE APAKKKSKKK GEPGPPDCDS PLFLPYKTLV STVGSMVFSE 660
  661 GEAQRLIEIL SEKTGVIQDT WHKATQKGDP VAVLKRQLEE KEKLLATEQE DAAVAKSKLR 720
  721 ELNKEMASEK AKAAAGEAKV KKQLVAREQE IAAVQARMQA SYQDHVKEVQ QLQGKIRTLQ 780
  781 EQLENGPNTQ LARLQQENSI LRDALNQATS QVESKQNTEL AKLRQELSKV NKELVEKSEA 840
  841 SRQEEQQRKA LEAKAATFEK QILQLQASHK ESEEALQKRL EEVTRELCRA QTSHANLRAD 900
  901 AEKAQEQQQR VAELHSKLQS SEVEVKSKCE ELSDLHGQLK EARAENSQLT ERIRSIEALL 960
  961 EAGQAQDSQV ILCVSFQASR AEADQQQTRL KELESQVSCL EKETSELKEA MEQQKGKNND1020
 1021 LREKNWKAME ALALAERACE EKLRSLTQAK EESEKQLHLA EAQTKEVLLA LLPELSIPAH1080
 1081 QNYADWLQEV KEKGSELLKK PPVSVEPSLD IVSKLREAEE TQNSLQAECD QYRTILAETE1140
 1141 GMLKDLQKSV EEEERVWKAK VGAAEEELQK SRFTVKHLED LVEKLRGELE SSDQVREHTS1200
 1201 HLEAELEKHM AAASAECQNY AKEVAGLRQL LLDSQSQLEE AKSEAQKQSN ELALLKTQLE1260
 1261 RTEATLEDEQ TRRQKLTAEF EEAQSTACRL QEELEKLRAA GPLESSGIEE VTQLKERLEK1320
 1321 EKRLTSDLGR AATKLQELLK TTQEQLTKEK DTVKKLQEQL GKAEDGSSSK EGTSV

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle