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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|109469654, gi...
Protein type: Transmembrane
Type Confidence: 0.62
Topology Confidence: 0.54
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQLCLWLPC QPFLAASIRG ILTGAIFILG CWGLSDFQKS FLQDLEPKDL SSSFSRHTAP  60
   61 LTGHPSSHLQ RLRQRRTSED ILHLELLVAV GPDVYQAHQE DTERYVLTNL NIGSELLRNP 120
  121 SLGAQLQVHL VKLIILSDSE NTPNITTNIT SSLMSVCEWS QTINPHDDRD PSHADLIIYI 180
  181 TRFDLELPDG NQQVRGVTQQ GGACSPSWSC LITEDTGFDL GVTIAHEIGH SFGLDHDGAP 240
  241 GSGSTCEARG HVMASDGAVP AGGALEWSTC SQRQLQHLLS TGQMHCLWDP PGLQSGLTWH 300
  301 QLVAQPGLFY SADDQCRVAF GAGAVACTFS REGLDVCQAL SCHTDPLDQS SCSRLLVPLL 360
  361 DGTECGVEKW CSKARCRSLA ELAPVAVVHG HWSSWGPHSP CSRSCGGGVI TRRRWCNNPR 420
  421 PAFGGRACVG EDLQAKMCNT QACEKTQLEF MSEQCAQTDR HPLQLSQGSA SFYHWDAAVQ 480
  481 YSQGDTLCRH MCWAVGESFI VSRGDSFLDG TRCVPNGPRE DGTVSLCLLG SCRTFGCDGK 540
  541 MDSQQVWDAC QVCGGDNSTC TSQNGSFTAG RAREYVTFLI VTPNMTSAHV INHRPLFTHL 600
  601 AVRIQDHYIV SGKSSMSPNV TYPSLLEDYR VEYRVTLTED QLPRLEEIHI RGPVRDDIEI 660
  661 QVYRRYGGEY GGLTHPDITF TYFQRKQQAA WVWAAKRGPC SVSCGAGLRW VTYSCQDQAQ 720
  721 NKWVRNAQCQ GSPQPPAWQE PCVSAPCPPH WVADDFGPCS VSCGGGLRER SLRCVEAHNG 780
  781 FLKTLPPAPC RAVAQQPAGE VENCNSQPCP TGWEVSDPSP CVSSACEPGL ESGSGTCVPR 840
  841 VGDSEKPAMA GPCRPDDMSP VPEPCVRTTC SPGSGPVDTM SLGEEASSPV GSGKPSSQAE 900
  901 HVWTPLVGLC SISCGKGLKE LYFLCMDSVL KMPVQEELCG LASKPPSRWE VCRARPCPAR 960
  961 WETRVLAPCP VTCGGGRVPL AIHCVQLDHG RPVSVPHSKC WPAPRPGSFE DCSPEPCPAR1020
 1021 WKVLPLGPCS ASCGLGTATQ MVACVQLDQG HDNEVDETFC KALVRPPASV PCLIADCAYR1080
 1081 WHISTWTECS VSCGDGIQRR HGTCLGPQAQ VPVPANFCQH LPKPVTVRGC WAGPCAGQKI1140
 1141 SSSLPHKEAT LPSQTLAAVT AASLQWSQPQ AQAHSLFPDS QSLGLQETLE EPGACGRQYL1200
 1201 EPTGTIDMRG QGQLDCVVAI GRPLGEVVTL QILESSLKCR AGELLLLWGK FTWRKMCWKM1260
 1261 SGRTFSTKAN TVVVRQHRVL PGGGVLLLYR SQPAPGTFYK ECDRQLFGPR GEITSPSLSP1320
 1321 DGRKAGTCRV FVSVAPQARI AIRALASDMG TASEGTSANY VSIRDIHGLK TTTFWGQQVL1380
 1381 YWESEGSEAE LEFSHGFLEA HASFQGQYWT IPPRTPEQVN SVALS

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