YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109469453, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	36	0.97
Transmembrane Helix	37	57	0.94
Non-Cytoplasmic	58	79	0.90
Transmembrane Helix	80	101	0.93
Cytoplasmic	102	108	0.84
Transmembrane Helix	109	128	0.91
Non-Cytoplasmic	129	134	0.63
Transmembrane Helix	135	157	0.87
Cytoplasmic	158	166	0.79
Transmembrane Helix	167	188	0.88
Non-Cytoplasmic	189	193	0.72
Transmembrane Helix	194	215	0.86
Cytoplasmic	216	277	0.94
Transmembrane Helix	278	299	0.80
Non-Cytoplasmic	300	312	0.79
Transmembrane Helix	313	331	0.90
Cytoplasmic	332	337	0.82
Transmembrane Helix	338	360	0.90
Non-Cytoplasmic	361	389	0.92
Transmembrane Helix	390	413	0.84
Cytoplasmic	414	426	0.79
Transmembrane Helix	427	449	0.88
Non-Cytoplasmic	450	458	0.75
Transmembrane Helix	459	479	0.92
Cytoplasmic	480	503	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQEPLLRAEG LDYDTFPEAP ASPEEKARAG ALQNRRVFLA TFAAVLGNFS FGYALVYTSP  60
   61 VIPALKRSSD PALRLDKIQA SWFGSVFTLG AAAGGLSAML LNDLLGRKLS IMFSAVPSAI 120
  121 GYALMAGARG LWMLLLGRML TGFAGGLTAA CIPVYVSEIA PPGVRGALGA TPQLMAVFGS 180
  181 LSLYALGLLL PWRWLAVAGE GPVLVMILLL SFMPNSPRFL LSKSRDEEAL QALIWLRADS 240
  241 EVHWEFEQIQ DNVRRQSSRV SWAEAWEPRV YRPILITVLM RFLQQLTGIT PILVYLQTIF 300
  301 DSTSVVLPSQ QDAAIVGAVR LLSVLIAAVT MDLAGRKVLL YVSASIMFVA NLTLGLYVQL 360
  361 VPRTLTPNST VEIVTLGGTE QPPAAAFNYL TLIPLLATML FIMGYAMGWG PITWLLMSEV 420
  421 LPLRARGVAS GLCVLVSWLT AFVLTKYFLL AVNAFGLQVP FFFFSAICLL SLLFTGCCVP 480
  481 ETRGRSLEQI EAFFHTRRMS FRP