YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109470500, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLGCKYHIRS ASSETVFWNE STTEANRSAV KEFIFIGLSD SQELQIFLFV FFLVFYVGIV  60
   61 FGNLLIVMTV SYDSHLHSPM YFLLANLSFV DLCLSSVTAP KMIADFFSKR KVISVHGCFA 120
  121 QIFLLHFFGG CELVTLIAMA FDRYVAICKP LSYTTIMCGN VCVGIVVTAW GIGFLHSVSQ 180
  181 LAFAVNLPFC GPNKVDSFYC DLPRVLKLAC ADTYRLDIMV IANSGVLTVC SFVLLIISYG 240
  241 IILLTIQRRP SDRSSKALST LTAHITVVLL FFGPCIFIYA WPFPIKSLDK FLAVFYSVVT 300
  301 PLLNPIIYTL RNTEMKTAMK RLRQWNLNFW VKS

Type	Start	End	Confidence
Non-Cytoplasmic	1	45	0.58
Transmembrane Helix	46	70	0.88
Cytoplasmic	71	79	0.51
Transmembrane Helix	80	99	0.63
Non-Cytoplasmic	100	121	0.76
Transmembrane Helix	122	141	0.87
Cytoplasmic	142	152	0.76
Transmembrane Helix	153	174	0.90
Non-Cytoplasmic	175	223	0.92
Transmembrane Helix	224	246	0.90
Cytoplasmic	247	259	0.93
Transmembrane Helix	260	283	0.89
Non-Cytoplasmic	284	291	0.86
Transmembrane Helix	292	311	0.94
Cytoplasmic	312	333	0.93