YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109470339
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.38
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	354	0.52
Transmembrane Helix	355	379	0.75
Cytoplasmic	380	392	0.42
Transmembrane Helix	393	415	0.59
Non-Cytoplasmic	416	429	0.35
Transmembrane Helix	430	463	0.66
Cytoplasmic	464	482	0.43
Transmembrane Helix	483	502	0.93
Non-Cytoplasmic	503	509	0.78
Transmembrane Helix	510	532	0.92
Cytoplasmic	533	549	0.78
Transmembrane Helix	550	573	0.86
Non-Cytoplasmic	574	580	0.73
Transmembrane Helix	581	603	0.91
Cytoplasmic	604	615	0.70
Transmembrane Helix	616	631	0.38
Non-Cytoplasmic	632	637	0.44
Transmembrane Helix	638	657	0.72
Cytoplasmic	658	681	0.68

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVEANTRPSL EARSLDSALP QGVSTVGKLE EAQGLWQPLR RLADCYTMNR EQTPKRVPQQ  60
   61 KGSPGLTLIP SLLPSPEEES PALCGPRPPP PRTARRHRPR ARGVSRRARA PPGCCGAVRS 120
  121 RLPRGPWARL IPGGLRARSR CSAQRRLHPR SGVRLAGGPR VVVAVAELPT PKYTLLSPAT 180
  181 SSEKAVTSTF LISLKQQLKL QLYTGAPPAA TAVGQSSALA PEWPHRFSHL LTLVLAGLTP 240
  241 ALDSPGPTCD REMDQVEAPE QSRTWHALGT ASRKSYRGRG LGSVASAAEG RAAGVPEGTA 300
  301 GCEHQVSASA RTLEPRRVNG RVPLKRSRIL RMALTGASAV SEEADSENKP FLLRALQIAL 360
  361 VVSLYWVTSI SMVFLNKYLL DSPSLQLDTP IFVTFYQCLV TSLLCKGLST LATCCPGMVD 420
  421 FPTLNLDLKV ARSVLPLSVV FIGMITFNNL CLKYVGVAFY NVGRSLTTVF NVLLSYLLLK 480
  481 QTTSFYALLT CAIIIGGFWL GIDQEGAEGT LSLTGTIFGV LASLCVSLNA IYTKKVLPAV 540
  541 DHSIWRLTFY NNVNACVLFL PLMVVLGELH ALLAFAHLNS AHFWVMMTLG GLFGFAIGYV 600
  601 TGLQIKFTSP LTHNVSGTAK ACAQTVLAVL YYEEIKSFLW WTSNLMVLGG SSAYTWVRGW 660
  661 EMQKTQEDPS SKEGEKSAIG V