YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109470215
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCDLTFSTVY LIILMGNFLI IVIISMEQAL QKPMYFFLAN FSSLEICYVS VTVPRILFNI  60
   61 ETQDRHISLM SCATQMCFFL IFGTTESLLL AVMSYDRYIA ICHPLLYPMV MNPSKCTQLA 120
  121 AGSWLGGIPI QVGQTCQIFS MKFCNSYKIN HFFCDIPPIL KLACGDTTMH ELSVYVVVMV 180
  181 VAAFPFILVL TSYSKIIATI LRLPTAKGRA KAFSTCSSHL LVVVLFYGSA TVTYLRPKSM 240
  241 HSPGTDKLLS LFYTIVTPMF NPLIYSLRNK EVISALRKLF FKAYY

Type	Start	End	Confidence
Cytoplasmic	1	7	0.77
Transmembrane Helix	8	26	0.96
Non-Cytoplasmic	27	35	0.62
Transmembrane Helix	36	58	0.83
Cytoplasmic	59	66	0.80
Transmembrane Helix	67	91	0.76
Non-Cytoplasmic	92	171	0.86
Transmembrane Helix	172	194	0.87
Cytoplasmic	195	211	0.85
Transmembrane Helix	212	234	0.86
Non-Cytoplasmic	235	248	0.87
Transmembrane Helix	249	267	0.86
Cytoplasmic	268	285	0.86