YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|109470179
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.57
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHVNQNILLA QHRVMNEVKN IFSNKSTEQN ESNKEDAGVK LKEVDYQRRS EVPGGTRERG  60
   61 VPGSLSFECS QTPACRASAG GALPLPPGPL GLGRSPGGGL GGPSASAHGT RLPLSVGRPG 120
  121 LSGSSSSRAS SPSRGSSGPR GTALAPPLLR ARHRGSQRQS RSPASDTAPP GWLPGSASRL 180
  181 PAAPPPLTAS APHSTAVRAR RRRAAATVHW DRDCRLSAPR PALAPAMADP GRLLLRPRPG 240
  241 GLLLLLLGLL LPFAGSFNLD VESPAEYAGP EGSYFGFAVD FFVPSTSSRM FLLVGAPKAN 300
  301 TTQPGIIEGG QVLKCDCSSS RRCQPIEFDS TGNRDYAKDD PLEFKSHQWF GASVRSKQDK 360
  361 ILACAPLYHW RTEMKQEREP VGTCFLQDGT KTVEYAPCRS KNIDADGQGF CQGGFSIDFT 420
  421 KADRVLLGGP GSFYWQGQLI SDQVAEIISK YDPNVYSIKY NNQLATRTAQ AIFDDSYLGY 480
  481 SVAVGDFNGD GIEDFVSGVP RAARTLGMVY IYDGKNMSSL HNFTGEQMAA YFGFSVAATD 540
  541 INGDDYADVF IGAPLFMDRG SDGKLQEVGQ VSVSLQRASG DFQTTKLNGF EVFARFGSAI 600
  601 APLGDLDQDG FNDIAIAAPY GGEDKKGLVY IFNGRSTGLN SVPSQILQGQ WAAQSMPPSF 660
  661 GYSMKGATDV DRNGYPDLVV GAFGVDRAVL YRARPVVTVN AGLEVYPSIL NQDNKICPLP 720
  721 GTALKVSCCS QCGCAEEGKQ DLPRRPDLYF QVELLLDKLK QKGAIRRALF LHNRSPGHSK 780
  781 DMTVFRGGQT QCEELVAYLR DESEFRDKLT PITIFMEYRL DQRTAADATG LQPILNQFTP 840
  841 ANVSRQAHIL LDCGEDNVCK PKLEVSVDSD QKKIYIGDDN PLTLTVKAQN QGEGAYEAEL 900
  901 IVSIPPQADF IGVVRNNEAL ARLSCAFKTE NQTRQVVCDL GNPMKAGTQL LAGLRFSVHQ 960
  961 QSEMDTSVKF DLKIQSSNSF DNVSPVVSYK VDLAVLAAVE IRGVSSPDHI FLPIPNWEYK1020
 1021 ETPETEEDVG PVVQHIYELR NNGPSSFSKA ILNLQWPYKY NNNTLLYILH YDIDGPMNCT1080
 1081 ADTEINPLRI KTPEKNDTAA EQGGRNHLIT KRDLSLSEGD VHTLGCGTAQ CLQITCQVGR1140
 1141 LDRGKSAILY VKSLLWTETF MNKENQNHSY SLKSSASFNI IEFPYKNLPI EDLFNSTLVT1200
 1201 TNITWGIQPA PMPVPVWVII LAVLAGLLLL AVLVFVMYRM GFFKRVRPPQ EEQEREQLQP1260
 1261 HENGEGNSET 

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle