YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109470122
Protein type:	Transmembrane
Type Confidence:	0.69
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTAMFMDIRP NIWSFKSFLN NLFTFTTFSH FLSKYLSRTL LTKMPYYDDF IHKKKIQSTG  60
   61 TDLAILSTGA EQTRKEGKVV KILACYTFES IWVFRHLYLA VESRHGPPPP PHPPPPPPPP 120
  121 PCGGIACHGE PAKFYGYDNL QRQPIFTTQQ EAELVQYPDC KSSSGNIGED PDHLNQSSSP 180
  181 SQMFPWMRPQ AAPGRRRGRQ TYSRFQTLEL EKEFLFNPYL TRKRRIEVSH TLALTERQVK 240
  241 IWFQNRRMKW KKENNRDKFP ASRPEAKDGD PKKEVSGLEE DGAEGPTN

Type	Start	End	Confidence
Cytoplasmic	1	11	0.61
Transmembrane Helix	12	32	0.63
Non-Cytoplasmic	33	288	0.93