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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|109468793
Protein type: Transmembrane
Type Confidence: 0.95
Topology Confidence: 0.70
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNFSEERAT MIAAGDLQEF VPFGRDHCKH HPNALNLQLR QLQPASELWS SDGAAGLVGS  60
   61 LQEVTIHEKQ KESWQLRKGV SEIGDAADYD EELYVAGNMV IWSKGSKSQA LAVYKAFTVD 120
  121 STVQQALWCD FIISQDKSEK IYKSHELEKC ICILQSSCMN MHSIDGKDYI ASLPFQVANV 180
  181 WATKYGLLFE RSSSSHEVPP SLPREPLPTM FSMLHPLDEI TPLVCKSGSL FGSSRVQYVV 240
  241 DPAVKIVFLN IDPSIVMTYD AVQNVHSVWT LRRVKPEEET AVXKFXEQAG TLQNAATSSS 300
  301 LTAHLRSLSK GESPVASPFQ NYSSIHSQSR SASSPSLHSR SPSISNMAAL SRAHSPALGV 360
  361 HSFSGVQRFN LSSHNQSPKR HSISHSPSGS FNDSFLAPET EPIVPELCID HLWTETLPNM 420
  421 REKNSQASKV FITTDLCGQK FLCFLVEAQL QLRCVATNHL SSGLNISTTL VISSANCRXS 480
  481 CPAPISGSHS GGLVFLVFYG HLILFTSLCG PGLVFEPSLH RVSLIVSGCF PITTLPIERI 540
  541 LGPRFIGGCT EVVLLSPVPE LRDSSKLNDS LYNEDCTFQQ LGTYIHSVRD PVHNRVTLEL 600
  601 SNGSMVRITI PEVATSELVQ TCLQAIKFIL PKEVAVQVLV KWYNVHSAPG GPSCHSEWSL 660
  661 FVICLLNMMG YNTDRLAWTR SFDFEGSLSP VIAPKKARPS DTGSDDDWEY LLNSEYHHNV 720
  721 ESHLLNKSLC LNALEVTKTK DEDFPQNLSL DSSTLLFAHI PAIFFVLHLV YEELKLNTLM 780
  781 GEGICSLIDL LVQLARDLKL EPYLDHYYRD YPTLVKTTGQ VCTIDQGQMG FMHHPSFFTS 840
  841 EPPSIYQWVS SCLKGEGTPP YPYLPGICER SRLVVLSIAL YTLGDESCVS DETSQYLSKV 900
  901 TLTPQKPQAE QEENRFTFRQ SASVSVLAER LVVWMASVGF TLRDLETLPF GIALPIRDAI 960
  961 YHCREQPDSD WSEAVCLLIG RQDLSKQACE GNLPRGKSVL SSDVASGAEA EEEDDGMNDL1020
 1021 NHEVMSLIWS EDLRVQDVRR LLQSAQPVRV NVVQYPELSD HEFIEEKENR LLQLCQRTMA1080
 1081 LPVGRGMFTL FSYHPVPTEP LPIPKLNLTG RAPPRNTTVD LNSGNIDVPP NMASWASFHN1140
 1141 GVAAGLKIAP ASQIDSAWIV YNKPKHAELA NEYAGFLMAL GLNGHLTKLA TLNIHDYLTK1200
 1201 GHEMTSIGLL LGVSAAKLGT MDMSITRLLS IHVPALLPPT STELDVPHNV QVAAVVGIGL1260
 1261 VYQGTAHRHT AEVLLAEIGR PPGPEMEYCT DRESYSLAAG LALGMVCLGH GSNLIGMSDL1320
 1321 NVPEQLYQYM VGGHRRFQTG MHREKHKSPS YQIKEGDTIN VDVTCPGATL ALAMIYLKTN1380
 1381 NRSIADWLRA PDTMYLLDFV KPEFLLLRTL ARCLILWDDI LPNSKWVDSN VPQIIRENSI1440
 1441 SLSEIELPCS EDLNLETLSQ AHVYIIAGAC LSLGFRFAGS ENLSAFNCLH KFAKDFMNYL1500
 1501 SAPNASVTGP YNLETCLSVV LLSLAMVMAG SGNLKVLQLC RFLHMKTGGE MNYGFHLAHH1560
 1561 MALGLLFLGG GRYSLSTSNS SIAALLCALY PHFPAHSTDN RYHLQALRHL YVLAAEPRLL1620
 1621 VPVDVDTNTP CYALIEVTYK GTQWYEQTKE ELMAPTLLPE LHLLKQMKVK GPRYWELLID1680
 1681 LSKGEQHLRS ILSKDGVLYV KLRAGQLSYK EDPMGWQSLL AQTVANRNSE ARAFKPETIS1740
 1741 SFTSDPALLS FAEYFCKPTV SMGQKQEILD LFSSILYECV AQETPEMLPA YIAMDQALRS1800
 1801 LKKRDMSNTS DLWQIKLILE FFSSRSHQER QQTYPKRGLF INSEFLPVVK CTVDSTLDQW1860
 1861 LQAGGDVCVH AYLSGQPVEK SQLNMLACFL VYHSVPAPRH LPPLGLEGST SFAELLFRFR1920
 1921 HLKMPVRALL RLAPVLLGNP QPMVM

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