YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109462582
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRSFHTNTSS TSSFILTGFP EMESLEHWLA ALLLLLYVIS IVGNALILFI IKEEQSLHQP  60
   61 MYYFLSLLSV NDLGVSFSTL PTVLASMCFH IPETAFDACL AQMFFIHFFS WTESGILLAM 120
  121 SFDRYVAICN PLHYSSVLTD ARVAHMGMSI IIRSFCMVFP LPFLLKRLPF CKANVLTHSY 180
  181 CLHPDLIRLP CGDTTINSMY GLFIVISAFG VDSVLILLSY VLILHSVLAI ASREERLKTL 240
  241 NTCVSHISAV LIFYVPMISV SMVHRFVKHA PEYVHKFTSL VYTLRSSNAQ SYYLFYQDXK 300
  301 NNEFRYLXTS DFQVIQXLFD HGARYCHHSG TAKGKNKCCR QKRCLXKVLR VSSCQFSEIV 360
  361 FVHSSKFXKX IRVHLRSXSN LXSLGAV

Type	Start	End	Confidence
Non-Cytoplasmic	1	27	0.75
Transmembrane Helix	28	51	0.93
Cytoplasmic	52	61	0.75
Transmembrane Helix	62	85	0.80
Non-Cytoplasmic	86	102	0.59
Transmembrane Helix	103	122	0.79
Cytoplasmic	123	142	0.66
Transmembrane Helix	143	165	0.81
Non-Cytoplasmic	166	201	0.77
Transmembrane Helix	202	224	0.89
Cytoplasmic	225	241	0.65
Transmembrane Helix	242	263	0.77
Non-Cytoplasmic	264	387	0.79