YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|187469273, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.46
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVEFAPLLVP WERRLQTFAV LQWVFSFLAL AQLCIFIFIG LLFTRFWLFS VLYATWWYLD  60
   61 WDRPRQGGRP IQFFRRMAIW KYMKDFFPVS LVKTAELDPS RNYIAGFHPH GVLAAGAFLN 120
  121 LCTESTGFTS LFPGIRSYLM MLTVWFRAPI FRDYIMSGGL VSSEKVSADH ILSRKGGGNL 180
  181 LAIIVGGAQE ALDARPGAYR LLLKNRKGFI RLALTHGAAL VPIFSFGENN LFNQVENTPG 240
  241 TWLRWIQNWL QKIMGISLPL FHGRGVFQYS FGLVPFRQPI TTVVGKPIEV QMIPHPSEEE 300
  301 VNRLHQLYIK ELCKLFEEHK LKFNVPEDQH LEFC

Type	Start	End	Confidence
Cytoplasmic	1	20	0.88
Transmembrane Helix	21	47	0.86
Non-Cytoplasmic	48	111	0.82
Transmembrane Helix	112	135	0.70
Cytoplasmic	136	207	0.86
Transmembrane Helix	208	227	0.81
Non-Cytoplasmic	228	248	0.83
Transmembrane Helix	249	267	0.46
Cytoplasmic	268	334	0.55