YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109468445
Protein type:	Transmembrane
Type Confidence:	0.94
Topology Confidence:	0.38
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	96	0.87
Transmembrane Helix	97	116	0.86
Non-Cytoplasmic	117	133	0.74
Transmembrane Helix	134	156	0.65
Cytoplasmic	157	170	0.63
Transmembrane Helix	171	193	0.76
Non-Cytoplasmic	194	197	0.54
Transmembrane Helix	198	219	0.65
Cytoplasmic	220	224	0.67
Transmembrane Helix	225	243	0.95
Non-Cytoplasmic	244	250	0.78
Transmembrane Helix	251	273	0.92
Cytoplasmic	274	290	0.78
Transmembrane Helix	291	314	0.86
Non-Cytoplasmic	315	321	0.73
Transmembrane Helix	322	344	0.91
Cytoplasmic	345	356	0.70
Transmembrane Helix	357	372	0.38
Non-Cytoplasmic	373	378	0.44
Transmembrane Helix	379	398	0.72
Cytoplasmic	399	422	0.68

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSRTWHALG TASRKSYRGR GLGSVASAAE GRAAGVPEGT AGCEHQVSAS ARTLEPRRVN  60
   61 GRVPLKRSRI LRMALTGASA VSEEADSENK PFLLRALQIA LVVSLYWVTS ISMVFLNKYL 120
  121 LDSPSLQLDT PIFVTFYQCL VTSLLCKGLS TLATCCPGMV DFPTLNLDLK VARSVLPLSV 180
  181 VFIGMITFNN LCLKYVGVAF YNVGRSLTTV FNVLLSYLLL KQTTSFYALL TCAIIIGGFW 240
  241 LGIDQEGAEG TLSLTGTIFG VLASLCVSLN AIYTKKVLPA VDHSIWRLTF YNNVNACVLF 300
  301 LPLMVVLGEL HALLAFAHLN SAHFWVMMTL GGLFGFAIGY VTGLQIKFTS PLTHNVSGTA 360
  361 KACAQTVLAV LYYEEIKSFL WWTSNLMVLG GSSAYTWVRG WEMQKTQEDP SSKEGEKSAI 420
  421 GV