YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109468312
Protein type:	Transmembrane
Type Confidence:	0.73
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMERIRKEMI LMERGLHSPT AGKRFSNLSD SSGSAVLEAL ENSQHPARLS PRLPSAPLHG  60
   61 ALGDLPAKGK FEIDTLFNLQ HPSSESTVSS EIASATESRK KPSHYSEAAA EADMSSDVEV 120
  121 GCSALRSPSG LGAAQLKENN AKGYAESGSV AGTTTSATGS GLGSLHGGGG GNSGGAALGG 180
  181 SGSGSGADQV RRYRTAFTRE QIARLEKEFY RENYVSRPRR CELAAALNLP ETTIKVWFQN 240
  241 RRMKDKRQRL AMSWPHPADP SFYTYMMTHA AATGSLPYPF HSHVPLHYYP HVGVTAAAAA 300
  301 AAASGAAAAA SSPFATSIRP LDTFRALSHP YSRPELLCSF RHPGLYQAPA TAAASSLSTP 360
  361 NPTPSKCGSR FAGPAFHLSG APCLQKTTPH GPVRLILSRL ISLRFYRNDM KTTFTDIHRI 420
  421 FDIDYLINAC HDLLSLEGSL GGRVQALPST FSGRTLAWLS KPRGSASRRC LPPHSSRGAV 480
  481 AALNLPQQRG SSHPRSKMDL QVLWSVAHKA EGYEGPNLGS LQRLVGSVPL DELSP

Type	Start	End	Confidence
Cytoplasmic	1	258	0.58
Transmembrane Helix	259	273	0.50
Non-Cytoplasmic	274	293	0.65
Transmembrane Helix	294	315	0.62
Cytoplasmic	316	535	0.54