YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109467586, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	81	0.97
Transmembrane Helix	82	102	0.93
Non-Cytoplasmic	103	111	0.72
Transmembrane Helix	112	134	0.86
Cytoplasmic	135	141	0.72
Transmembrane Helix	142	161	0.81
Non-Cytoplasmic	162	172	0.74
Transmembrane Helix	173	191	0.82
Cytoplasmic	192	202	0.86
Transmembrane Helix	203	226	0.88
Non-Cytoplasmic	227	233	0.79
Transmembrane Helix	234	256	0.92
Cytoplasmic	257	274	0.77
Transmembrane Helix	275	295	0.81
Non-Cytoplasmic	296	305	0.67
Transmembrane Helix	306	327	0.91
Cytoplasmic	328	334	0.91
Transmembrane Helix	335	356	0.85
Non-Cytoplasmic	357	360	0.53
Transmembrane Helix	361	379	0.84
Cytoplasmic	380	389	0.78
Transmembrane Helix	390	411	0.81
Non-Cytoplasmic	412	419	0.64
Transmembrane Helix	420	445	0.84
Cytoplasmic	446	455	0.65
Transmembrane Helix	456	472	0.77
Non-Cytoplasmic	473	490	0.77
Transmembrane Helix	491	513	0.92
Cytoplasmic	514	547	0.88

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEDEDQTVEC QYSKPPLGTT HAASRHHELQ EERVTNLKSP DGNEPTEDSN LLTGGEKKPQ  60
   61 DSLAEPRSLQ SPRRFLACPP HGRLAGVITN GTMVVLLWAV VWSITGPECL PGGNLFGIII 120
  121 LFYCSITGGK LFGLIKFPTL PPLPPLLGML LAGFLLRNVP VISDNVRIQH KWSSSLRSIA 180
  181 LSVILVRAGL GLDSKALKKL KGVCVRLAMG PCIVEACASA LLSHFLMGLP WQWGFILGFV 240
  241 VGAVSPAVVV PSMLLLQEGG YGVEKGIPTL LMAAGSFDDI LAITGFNTCL GVAFSTGSTV 300
  301 FNIFRGILEV VIGVATGSLL GFFIQYFPSR DQDNLVWKRA FLVLGFAVLA VFSSVIFSFP 360
  361 GSGGLCTLVM AFLAGMRWTD KKSEVEKIIA LTWDVFQPLL FGLIGAEVSI ASLRAETVGL 420
  421 CVATLGIAVL IRILTTFLMV CFAGFNIKEK IFISFAWLPK ATVQAAIGSV ALDTARSHGE 480
  481 KQLEDYGMDV LTVAFLAILI TAPIGSLLIG LLGPRVLQKS EHRNEEEVQG ETSAHVQRKS 540
  541 GDSVTEA