YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109467169, gi...
Protein type:	Transmembrane
Type Confidence:	0.60
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKEPDAIKLF VGQIPRHLEE KDLKPIFEQF GRIFELTVIK DKYTGLHKGC AFLTYCARDS  60
   61 ALKAQSALHE QKTLPGMNRP IQVKPADSES RGEDRKLFVG MLGKQQTDED VRKMFEPFGT 120
  121 IDECTVLRGP DGTSKGCAFV KFQTHAEAQA AINTLHSSRT LPGASSSLVV KFADTEKERG 180
  181 LRRMQQVATQ LGMFSPIALQ FGAYSAYTQA LMQQQAALVA AHSAYLSPMA TMAAVQMQHM 240
  241 AAINANGLIA TPITPSSGTS TPPAIAATPV SAIPAALGVN GYSPVPTQPT GQPAPDALYP 300
  301 NGVHPYPAQS PAAPVDPLQQ AYAGMQHYTA AYPAAYSLVA PAFPQPPALV AQQPPPPPQQ 360
  361 QQQQQQQQQQ QQQQQQQQQQ QREGPDGCNI FIYHLPQEFT DSEILQMFVP FGHVISAKVF 420
  421 VDRATNQSKC FGFVSFDNPA SAQAAIQAMN GFQIGMKRLK VQLKRPKDAN RPY

Type	Start	End	Confidence
Cytoplasmic	1	186	0.55
Transmembrane Helix	187	207	0.52
Non-Cytoplasmic	208	473	0.72