YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109466894
Protein type:	Transmembrane
Type Confidence:	0.95
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGSVLSCKN AQLARDFREC SMNLLFSVCG LTICAAIICT LSAIVCCVQI FSLDLVHVQL  60
   61 APERSVSGPL GSLACTSSPP APLLHTMLDL EEFVPPVPPP PYYPPEYTCS SETDAQSITY 120
  121 NGSMDSPVPL YPTDCPPSYE AVMGLRRDSQ ATLFDPQLHD GSCVCERVPS IVDVSMDSGS 180
  181 LVLSAIGDLP GGSSPSEDSC LLELQGSVRS VDYVLFRSIQ RSRAGYCLSL DCGLRGPFED 240
  241 SPLPRRPPRA ARSYSCSAPE APPPLGAPTA ARSCHRLEGW PPWVGPCFPE LRRRVPRGGS 300
  301 RSTAPPPARA PVRRFSDSSG SLTPPGHRPP HRTPPPPLLL PRSHSDPGIT TSSDIADFRD 360
  361 LYTKVLEEEA ASISSADTGL CSEACLFRLA RCPSPKLLRA HSAEKRRPVP TFQKVPLPSG 420
  421 PAPAHSLGDL KGSWPGRGLV TRFLQLSRKS PDPAGTGAHG HKQVRRSPWG RPGRESLHLR 480
  481 SCGDLSSGSS LRRLLSARRL EHGIRPHSLS LNGGSRETGL

Type	Start	End	Confidence
Cytoplasmic	1	23	0.88
Transmembrane Helix	24	45	0.90
Non-Cytoplasmic	46	520	0.99