YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109466892
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMPSPSDSSR SLTSRPSTRG LTHLRLHRPW LQALLTLGLA QVLLGILVVT FSMVASSVTT  60
   61 TESIKRSCPS WAGFSNLLFS VCGLTICAAI ICTLSAIVCC VQIFSLDLVH VLAPERSVSG 120
  121 PLGSLACTSS PPAPLLHTML DLEEFVPPVP PPPYYPPEYT CSSETDAQSI TYNGSMDSPV 180
  181 PLYPTDCPPS YEAVMGLRRD SQATLFDPQL HDGSCVCERV PSIVDVSMDS GSLVLSAIGD 240
  241 LPGGSSPSED SCLLELQGSV RSVDYVLFRS IQRSRAGYCL SLDCGLRGPF EDSPLPRRPP 300
  301 RAARSYSCSA PEAPPPLGAP TAARSCHRLE GWPPWVGPCF PELRRRVPRG GSRSTAPPPA 360
  361 RAPVRRFSDS SGSLTPPGHR PPHRTPPPPL LLPRSHSDPG ITTSSDIADF RDLYTKVLEE 420
  421 EAASISSADT GLCSEACLFR LARCPSPKLL RAHSAEKRRP VPTFQKVPLP SGPAPAHSLG 480
  481 DLKGSWPGRG LVTRFLQLSR KSPDPAGTGA HGHKQVRRSP WGRPGRESLH LRSCGDLSSG 540
  541 SSLRRLLSAR RLEHGIRPHS LSLNGGSRET GL

Type	Start	End	Confidence
Non-Cytoplasmic	1	32	0.47
Transmembrane Helix	33	58	0.79
Cytoplasmic	59	73	0.44
Transmembrane Helix	74	104	0.75
Non-Cytoplasmic	105	572	0.83