YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109464937, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKLDVNVSE DEGFCHFSES YKQVYLSLTY SLIFMLGMPL NGAVLWLSWC QTKPWSCTTI  60
   61 YLMNLMVADL LYMLSLPFLI ITYAAGDTWL FGETLCRLVR FLFYTNLYSS ILLLTCISLY 120
  121 RFLGVCHPLS SLSFRTHRHT WQAAATTWTL VVVQLLPTLV FSHTDYVNGH VICYDTASPE 180
  181 NFDHFFAYSM VLTLSGFVFP SLIILGCYSL MVRSLTNPAE DLPTTGHAAR AKSIRTILLV 240
  241 CSLFMLCFVP FHIARSFYLV IRFLNSQDCQ LLLAASMAYK ICRPLVSASS CLNPVLYFLS 300
  301 QGNNRVQLLQ KLRQNKVGEH PTSVEGARRS RQIQALPG

Type	Start	End	Confidence
Non-Cytoplasmic	1	26	0.93
Transmembrane Helix	27	50	0.88
Cytoplasmic	51	59	0.90
Transmembrane Helix	60	85	0.82
Non-Cytoplasmic	86	101	0.89
Transmembrane Helix	102	124	0.86
Cytoplasmic	125	140	0.85
Transmembrane Helix	141	161	0.88
Non-Cytoplasmic	162	185	0.92
Transmembrane Helix	186	212	0.83
Cytoplasmic	213	232	0.96
Transmembrane Helix	233	254	0.91
Non-Cytoplasmic	255	338	0.87