YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109466673, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTNSSMFCPI YRDLEPFTYF FYLVYLIGII GSCFATWAFI QKSTNHRCVS IYLINLLTAD  60
   61 FLLTLALPVK IVVDLGVAPW KLRIFHCQVT ACLIYINMYL SIIFLAFVSI DRCLQLVHSC 120
  121 KIYRIQEPGF AKMISAVVWL MVLLIMVPNM VIPIKNIKEK SNVGCMEFKR EFGKNWHLLT 180
  181 NFICVAIFLN FSAIILISNF LVIRQLYRNR DNANYPSVKS ALLNILLVTA SYIICFVPYH 240
  241 AVRIPYTLSQ TEVISDCSTR IALFKAKEAT LLLAVSNLCF DPILYYHLSK AFRLKVTETF 300
  301 ASPQKMKARE EKPRRENDVQ STGSAC

Type	Start	End	Confidence
Non-Cytoplasmic	1	18	0.85
Transmembrane Helix	19	40	0.94
Cytoplasmic	41	48	0.81
Transmembrane Helix	49	72	0.85
Non-Cytoplasmic	73	86	0.77
Transmembrane Helix	87	108	0.90
Cytoplasmic	109	128	0.78
Transmembrane Helix	129	148	0.90
Non-Cytoplasmic	149	177	0.82
Transmembrane Helix	178	203	0.86
Cytoplasmic	204	220	0.84
Transmembrane Helix	221	242	0.90
Non-Cytoplasmic	243	326	0.79