YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|149064699, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGLNLTLAKL PGNELYSQAS HTANSTIEGH GKNSTHHNEF DTIILPVLYL VIFVASILLN  60
   61 GLAVWIFFHI RNKTSFIFYL KNIVVADLIM TLTFPFRIVR DAGFGPWYFE FILCRYTSVL 120
  121 FYANMYTSIV FLGLISVDRY LKVVKPFGDS RMYSITFTKV LSICVWVIMA VLSLPNIILT 180
  181 NGQPTKENIH DCMKLKSPLG AKWDMAVTYV DSCLFVAVLV ILIGCYIAIS RYIHKSSRQF 240
  241 ISQSSRKRKH NQSIRVVVAV FFTCFLPYHL CRIPFTFSHL DRLLDDSAHK ILHYCKEMTL 300
  301 FLSACNVCLD PIIYFFMCKS FSRRLFKKSN IRTRSESIRS LQSVRRSEVR IYYDYTDV

Type	Start	End	Confidence
Non-Cytoplasmic	1	44	0.95
Transmembrane Helix	45	68	0.92
Cytoplasmic	69	77	0.84
Transmembrane Helix	78	99	0.90
Non-Cytoplasmic	100	117	0.87
Transmembrane Helix	118	137	0.91
Cytoplasmic	138	154	0.88
Transmembrane Helix	155	178	0.86
Non-Cytoplasmic	179	207	0.97
Transmembrane Helix	208	233	0.84
Cytoplasmic	234	252	0.94
Transmembrane Helix	253	271	0.95
Non-Cytoplasmic	272	297	0.93
Transmembrane Helix	298	318	0.79
Cytoplasmic	319	358	0.83