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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|109466541, gi...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.72
Topology Confidence: 0.67
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNLAANRTPG RRRFPLPSPS LGQLLRVWGL LSLLPSPARV QAAEQRQVFQ VMEEQPPGTL  60
   61 VGTIPTRPGF TYRLSESHAL FAINSSTGAL YTTATIDRES LPSDVVNLVV LSSSPTYPTE 120
  121 VRVLVRDLND NAPVFPDPSI VVTFKEDSGS GRQVILDTAT DSDIGSNGVD HRSYRIVRGN 180
  181 EAGRFRLDIT LNPSGEGAFL HLVSKGGLDR EVTPQYQLLV EVEDKGEPKR RGYLQVNVTV 240
  241 QDINDNPPVF GSSHYQAGVP EDAVVGSSVL QVAAADADEG TNADIRYRLQ DEGTPFQMDP 300
  301 ETGLITVREP LDFEARRQYS LTVQATDRGV PSLTGRAEAL IQLLDVNDND PVVKFRYFPA 360
  361 TSRYASVDEN AQVGTVVALL TVTDADSPAA NGNISVQILG GNEQRHFEVQ RSKVPNLSLI 420
  421 KVASALDRER IPSYNLTVSV SDNSGAPPTA EVQARSSVAS LVIFVNDIND HPPVFEQQVY 480
  481 RVNLSEEVPP GSYVSGVSAT DGDSGLNANL RYSIVSGNGL GWFHISEHSG LVTTSAAGGL 540
  541 DRELASQIVL NISARDQGVH PKVSYAQLVV SVLDVNDQKP VFSQPEGYEV SVVENAPTGT 600
  601 ELLVLGATDG DLGDNGTVRF SLQEAESDQR LFRLDPVSGR LSTISSLDRE EQAFYCLLIL 660
  661 ATDLGSPPQS STVQVNVSLL DINDNSPVFY PVQYFAHIQE NEPGGSYVTT VSATDPDMGP 720
  721 NGTVKYSISA GDRSRFQIHA KSGVISTKMA LDREEKTAYQ LQIVATDGGN LQSPSQAIVT 780
  781 VTVLDTQDNP PVFSQAAYSF VVFENVALGY HVGSVSATTM DLNANISYLI TTGDQRGMFA 840
  841 MNPVTGQLTT ASVIDREEQS FYQLRVVASG GAVTGDAVVN ITVKDLNDNA PHFLQAVESI 900
  901 DAVENWQAGH SIFQAKAVDP DEGVNGRVLY SLKQNPKNLF TINEQNGNIS LLGTLDVHAG 960
  961 SYQVEIVASD MGVPQLSSSI ILTVYVHDVN DNPPVFDQIS YEVTLSESEP VNSRFFKVQA1020
 1021 LDKDSGANGE IAYAITDGNS GEAFGIFPDG QLYIKSELDR ELQDRYVLLV VASDRAVEPL1080
 1081 SATVNVTVIL EDVNDNRPLF NSTNYTFYFE EEQRAGSFVG KVSAVDKDFG PNGEVRYAFE1140
 1141 VAQPDFELHA ITGEITNTHK FDRESLMRRR GTAVFSFTVI ATDQGLPQPL KDQATVHVYM1200
 1201 KDINDNAPKF LKDFYQATVS ETATNLTQVL RVSASDVDEG NNGLIHYSIL KGNEERQFSI1260
 1261 DRFSGQVTLV GKLDYEATPA YSLLIQAVDS GTVPLNSTCT LSIDILDEND NTPSFPKSTL1320
 1321 FVDVLENMRI GELVSSVTAT DSDSGVNADL HYTITGSNNH GTFSISPNTG SIFLAKKLDF1380
 1381 ETQSLYKLNI TAKDQGRPPR SSTMSVVIHV RDFNDNPPSF PPGDIFKSIV ENIPLGTSVI1440
 1441 SVTAHDPDAD INGQLSYAII QQMPRGNHFS IDEVKGTIYT SAEIDREFAN LFELTVKAND1500
 1501 QAVPIETRRY ALKNVTILVT DLNDNVPIFI SQNALAADPS AMIGSVLTTI MAADPDEGAN1560
 1561 GEVEYEIVNG DTDTFTVDRY SGDLRVASAL VPSQLIYNLI VSATDLGPER RKSTTELTVI1620
 1621 LQGLDGPVFT QTKYITILKE GEPIGTNVIS IEAASPRGSE APVEYYIVSV RCEEKTVGRL1680
 1681 FTIGRQTGVI QTAAILDREQ GACLYLVDVY AIEKSSAFPR TQRAEVEITL QDINDNPPVF1740
 1741 PTDTLDLTVE ENIGDGSKIM QLTAMDADEG ANALVTYALI SGADDSFRID PESGDLIATK1800
 1801 RLDREHRSKY SLLVRADDGL QSSDMRINIT ISDVNDHTPR FSRPVYSFDI PEDTTPGSLV1860
 1861 AAILATDDDS GVNGEISYVV EEDDGDGVFF LNPVTGVFNL TRALDYERQQ YYILTVRAED1920
 1921 GGGQFTTIRA YFNILDINDN PPVFSLSSYS TSLMENLPLG STVLVFNVTD ADDGVNSQLS1980
 1981 YSIASGDSLG QFAVDKHGVL KALKALDRES QSFYNLVIQV HDLPQPPASR FTSTAQVSII2040
 2041 LLDVNDNPPM FLSPKLTYIP ENTPIDTVVF KAQATDPDSG PNSYIEYTLL NPAGNKFSIG2100
 2101 TIDGEVHLTG ELDREEVSNY SLTVVATDKG QPPLSSSTEV VVMVLDINDN NPVFAQAMYR2160
 2161 VQIKENTLTG TDIIQVSAAD NDEGTNGQVR YGIVGGNTHQ EFRIDSVTGA ITVAKSLDRE2220
 2221 TIPAYILTVQ ATDRGSSPRT DSCTVAITLL DMNDFVPVFE LSPYSVNVPE NLGALPRTIL2280
 2281 QVVARDDDQG PNSQLSYVLL GGNEDNAFAL TASGELRVTQ SLDREARDHF VLVVTAADAG2340
 2341 SPALTGTGTI NIIVDDINDN VPTFASNMYF TAIPEDAPTG TDVLLVNASD ADAATNAVIS2400
 2401 YSIIGGNSQF TINPSTGQII TSALLDRETK DNYTLVVVAS DAGSPESLSS STSVLVSVTD2460
 2461 VNDNPPRFQH HPYVTHIPSP TPPGSFVFAV TVTDADIGPN SELHYSLSGR NSEKFHIDPL2520
 2521 RGAIMAAGPL SGASEVTFSV HVKDGGSFPK TDSTTVTVRF ANKADFPKVR AKEQTFMFPE2580
 2581 NQPVGTLVTT ITGSSLRGET LSYYIASGNL GNAFQIDPLT GQVSISQPLD FEKIQKYIVW2640
 2641 IEARDGGFPP FSSYEKLDIT VLDINDNAPA FEEDPFVSEI LENLSPRKIL TVSATDKDSG2700
 2701 PNGQLAYEIV NGNQESSFTI NHATGEIRSI RPLDREKISY YELTVKSSDK GSPSQSTSVK2760
 2761 VIISVLDEND NAPRFSQIFS AYVSENSPLG YTVTRVTTSD EDIGINAISR YSIADTALPF2820
 2821 TINPNTGDIV ISRPLNREDT DRYRIRVSAH DSGWTVSTDV TIFVTDINDN TPRFSRPSYY2880
 2881 LDCPELTELG SRVTQVSATD PDEGSNGQVF YFIKSKSEYF RINATTGEIF NKQVLKYQNV2940
 2941 SGFSNVNINR HSFIVTASDR GNPSLLSETT VTINTVDSND NPPQFLKNKY FTPVTKNVKV3000
 3001 GTKLIKVTAV DDKDFGLNSE VEYFVSNGNH LGKFKLDNDT GWISIASSLV SDLNQNFFIR3060
 3061 VTAKDKGNPP LSSQVVIHIT VTEENYHTPE FSQSHISATI PESHSIGSVV RTVSARDRDT3120
 3121 AMNGLISYNI SSGNEEGIFA INSSTGVVTL AKALDYELSS KHEMTISATD GGWVARTGYC3180
 3181 SLTVSVIDVN DNSPVFVPDE FFPTVMENAP SGTTVIHLNA TDADSGANAV IAYTVQSSDS3240
 3241 DLFVIDPNTG VITTQGFLDF ETKQSYHLTV KAFNVPDEEK CSFATVNIQL MGTNEYVPRF3300
 3301 VSKLYYFEVS EAAPRGTAVG EVFASDRDMG ADGEVHYLIF GNSRKKGFQI HKMTGQIYVS3360
 3361 GLLDREKEER VSLKVLAKNF GNIRGADIDE VTVNITVLDA NDPPVFSLNT YRVQISEGVP3420
 3421 IGTHVTFVSA FDSDSIPSWS RFSYFIGSGN ENGAFSINPQ TGQITVTSGL DRESLPVYNL3480
 3481 TVLAVDSGTP SATGSASLLV TLEDINDNGP VLTVSEGEVL ENKRPGTLVM TLQSTDPDLP3540
 3541 PNQGPFNYYL LSTGPATNYF SLNTAGVLST TREIDREQIA DFYLSVVTRD SGAPQMSSTG3600
 3601 TVHITVLDQN DNPSQSRTVE IFVNYYGNLF PGGTLGSVKP QDPDVLDSFH CSLTSGVTSL3660
 3661 FSIPAGSCDL SSQPRSTDGT FDLTVVSSDG VHSTVTNNIR VFFAGFSNAT IDNSILLRVG3720
 3721 VPTVKDFLTN HYLHFLRIAS SQLTGLGTAV QLYAAYEENN RTFLLAAVKR NHNQYVNPSG3780
 3781 VATFFESIKE ILLRQSGVKV ESVDHDPCIH APCQNGGSCL RRLAVGSALK IQESLPVIIV3840
 3841 ANEPLQPFQC KCVPGYAGSW CEVDIDECLP APCHNGGTCH NLVGGFSCSC SEGFTGRACE3900
 3901 RDINECLPSP CKHGAVCQNF PGGFNCVCKT GYTGKMCESS VNYCECNPCF NGGSCQSGVE3960
 3961 SYYCHCPFGV FGKHCELNSY GFEELSYMEF PSLDPNNNYI YVKFATIKSH ALLLYNYDNQ4020
 4021 TGERAEFLAL EIAEERLRFS YNLGSGTYKL TTMKKVSDGQ FHTVIARRAG MAASLTVDSC4080
 4081 SENQEPGYCT VSNVAVSDDW TLDVQPNRVT VGGIRSLEPI LQRKGHVESH DFVGCIMEFA4140
 4141 VNGRPLEPSQ ALAAQGILDQ CPRLEGTCAR NPCQHGGTCV DFWSWQQCQC MEGLTGKYCE4200
 4201 KSVTPDTALS LEGKGRLDYH MSQSEKREYL LTQSIREATL EPFGVNSLEV KFRTRSENGI4260
 4261 LIHIQESSNY TTVKIKNGKV HFTSDAGVAG KVERIIPEAY VADGHWHTFR ISKNGSSTVL4320
 4321 SVDRTHSRDV VHPTQDFGGI EVLSMSLGGI PPNQAHRDTQ TGFNGCIASV LYGGESLPFS4380
 4381 GKHSLASISK TDPSVKIGCR GPNICASNPC WGDLLCINQW YAYKCVPPGD CASHPCQNGG4440
 4441 SCEPGLLSGY TCSCPESHTG RTCETVVACL GVLCPQGKVC KAGSPGGHVC VQSQGPDEIS4500
 4501 LPLWAVPAIV GSCATALALL VLSLILCNQC RGKMPKNPKE EKKPKEKKKK GSENVAFDDP4560
 4561 DNIPPYGDDL AVRKQPEGNP KPDIIERENP YLIFDETDIP HNSETIPSAP LASPEQEIEH4620
 4621 YDIDNASSIA PSDADIIQHY KQFRSHTPKF SIQRHSPLGF ARQSPMPLGA SSLTYQPSSY4680
 4681 GQALRTSSLS HSACPTPNPL SRHSPAPFSK PSAFYRNSPA RELHLPLRDG GTLEMHGDPC4740
 4741 QPGMFNYATR LGRRSKSPQA MASHGSRPGS RLKQPIAQIP LESSPPVGLS IEEVERLNTP4800
 4801 RPRNPSICSA DHGRSSSEED CRRPLSRTRN PADGIPAPES SSDSDSHDSF TCSEMEYDRE4860
 4861 KPVVYTSRMP KLSQVNESDA DDEDNYGARL KPRRYHGRRA EGGPVGTPAA ASGAADSTLK4920
 4921 LGQQAGNFNW DNLLNWGPGF GHYVDVFKDL ASLPEKAAGN EEGKSGAAKP AAKDGEAEQY4980
 4981 V

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