YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109464494, gi...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.95
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMALGRAFAI VFCLLQAASG ESGNAQDGDL EDAEPDDHSF WCHSQLEVDG NQHSLTCAFN  60
   61 DPDIKTTNLE FQICGALLGI DCLTLNKLRE MYFIKTSKFL LIGNSSVCVK LGKMDVICKI 120
  121 LDISTIVKPE APSNLKVVYR KEANDFLVTF NTSHSTKKYV TALKHDVAYR PERGESNWTH 180
  181 VYLFHTRTTI LQRKLQPKAV YEIKVRSIPN HEYFKGFWSE WSPSSTFETP DSKYQGGWDP 240
  241 VLPSIILLSL FSMVLLVILA HVLWKKRIKP VVWPSLPDHK KTLEQLCKKP KKNLNVSFNP 300
  301 ESFLDCQIHE VNGIQARDEV ESFLQNDLPP RPGELEKQGH RATVHGANWP SEISGSTPET 360
  361 FRRESPLRCL ARNLSTCNTP AFLSSRSPDY REGDGNRSHV YQDLLPSSRN TNGTVPQPFP 420
  421 LQSGILIPVS QGQPISTSSV LNQEEAYVTM SSFYQNK

Type	Start	End	Confidence
Signal Peptide	1	20	0.99
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	241	0.99
Transmembrane Helix	242	264	0.85
Cytoplasmic	265	457	0.95