YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109465823
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDFDSNPFA DPDLNNPFKD PSVTQVTRNV PPGLDEYNPF SDSRTPPPGG VKMPNVPNTQ  60
   61 PAIMKPTEEH PAYTQITKEH ALAQAELLKR QEELERKAAE LDRREREMQN LSQHGRKNNW 120
  121 PPLPSNFPVG PCFYQDFSVD IPVEFQKTVK LMYYLWMFHA VTLFLNIFGC LAWFCVDSSR 180
  181 AVDFGLSILW FLLFTPCSFV CWYRPLYGAF RASDPSFRFH VFIFVYVCIV CMHLISVWGH 240
  241 GGWISSLTGL NKNIPVGIMM IIIAALFTAS AVISLVMFKK VHGLYRTTGA SFEKAQQEFA 300
  301 TGVMSNKTVQ TAAANAASTA ATSAAQNAFK GNQM

Type	Start	End	Confidence
Cytoplasmic	1	154	0.99
Transmembrane Helix	155	176	0.95
Non-Cytoplasmic	177	183	0.88
Transmembrane Helix	184	206	0.88
Cytoplasmic	207	218	0.87
Transmembrane Helix	219	239	0.92
Non-Cytoplasmic	240	255	0.86
Transmembrane Helix	256	278	0.93
Cytoplasmic	279	334	0.98