YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109465281
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAMTKNQVLE QRMLDFSHTA PHSRYFHWKM NLCVILLILV FMVPFYIGYF IVSNIQLLHK  60
   61 QRLLFSCLLW LTFMYFFWKL GDPFPILSPK HGILSIEQLI SRVGVIGVTL MALLSGFGAV 120
  121 NCPYTYMSYF LRNVTDTDIL ALERRLLQTM DMIISKKKRM AVTRRTMFQR GDVQNKPSGL 180
  181 WGMLKSVTAS APGSENLTLI QQEVDALEEL SRQLFLETAD LYATKERIEY SKTFKGKYFN 240
  241 FLGYFFSIYC VWKIFMATIN IVLDRVGKTD PVTRGIEITV NYLGIQFDVK FWSQHISFIL 300
  301 VGIIIVTSIR GLLITLTKFF YAISSSKSSN VIVLLLAQIM GMYFVSSVLL IRMSMPPEYR 360
  361 TIITEVLGEL QFNFYHRWFD VIFLVSALSS ILFLYLAHKQ APEKHMAP

Type	Start	End	Confidence
Non-Cytoplasmic	1	29	0.72
Transmembrane Helix	30	52	0.89
Cytoplasmic	53	61	0.64
Transmembrane Helix	62	81	0.88
Non-Cytoplasmic	82	98	0.74
Transmembrane Helix	99	122	0.83
Cytoplasmic	123	237	0.86
Transmembrane Helix	238	257	0.83
Non-Cytoplasmic	258	294	0.87
Transmembrane Helix	295	314	0.93
Cytoplasmic	315	330	0.79
Transmembrane Helix	331	351	0.94
Non-Cytoplasmic	352	375	0.91
Transmembrane Helix	376	397	0.92
Cytoplasmic	398	408	0.94