YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109463918
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.43
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTPSYTTTST ITEPPSGVMQ KGKEKLKTLP LYLEEDIRPE MREDIHDPSY QDEEGPPPKL  60
   61 EYVWRNIILM ALLHVGALYG ITLIPSSKVY TLLWAFIYYA ISIEGIGAGV HRLWSHRTYK 120
  121 ARLPLRIFLI IANTMAFQND VYEWARDHRA HHKFTETHAD PHNSRRGFFF SHVGWLLVRK 180
  181 HPAVKEKGGK LDMSDLKAEK LVMFQRRYYK PGILLLCFIL PTLVPWYFWG ETFLHSFYVA 240
  241 TLLRYAVVLN VTWLVNSAAH LYGYRPYDKN IDPRENALVS LGTLGEGFHN YHHAFPYDYS 300
  301 ASEYPWHINF TTFFIDCMAF LGLAYDRKRV SKATVLARIK RTGDGSHKSG

Type	Start	End	Confidence
Cytoplasmic	1	62	0.99
Transmembrane Helix	63	84	0.89
Non-Cytoplasmic	85	93	0.73
Transmembrane Helix	94	114	0.94
Cytoplasmic	115	207	0.95
Transmembrane Helix	208	229	0.90
Non-Cytoplasmic	230	241	0.75
Transmembrane Helix	242	264	0.57
Cytoplasmic	265	276	0.62
Transmembrane Helix	277	293	0.43
Non-Cytoplasmic	294	304	0.67
Transmembrane Helix	305	325	0.71
Cytoplasmic	326	350	0.95