YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|109463825
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.93
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLRVIVESAT NIPKTKFGKP DPIVSVIFKD EKKKTKKVDN ELNPVWNEIL EFDLRGIPLD  60
   61 SSSSLVIVVK DFETIGQNKL IGTATVSLKD LIGDQNRSLP YKQISLLNEK GQDTGATIDL 120
  121 VIGYTPPSAP YPNDPSGTSV TGVGEEEEED QGDEDRVDGM VRGPGPKGPS GTMSEAQLAR 180
  181 RITKGKSSRR MLSNKPQDFQ IRVRVIEGRQ LCGNNIRPVV KVHVCGQTHR TRIKRGNNPF 240
  241 FDELFFYNVH ITPSELMDEI ISIRVYNSHS LRADSLMGEF KIDVGFVYDE PGHAVMRKWL 300
  301 LLNDPEDTSS GAKGYMKVSM FVLGTGDEPP SEKRDRDNDS DDVESNLLLP AGIALRWVTF 360
  361 LLKIYRAEDI PQMDDAFSQT VKEIFGGNAD KKNLVDPFVE VSFAGKKVCT NIIERNANPE 420
  421 WNQVVNLQIK FPSMCEKIKL TVYDWDRLTK NDVVGTTYLY LSKIAASGGE VEANTGETEV 480
  481 GFVPTFGPCY LNLYGSPREY TGFPDPYDEL NSGKGEGVAY RGRILVELNT FLEKKPPEKK 540
  541 LEPISNDDLL VVEKYQRRRK YSLSAVFHSA TMLQDVGEAI QFEVSIGNYG NKFDATCKPL 600
  601 ASTTQYSRAV FDGNYYYYLP WARTKPVVTL TSYWEDISHR LDAVNTLLVM AERLQSNIEA 660
  661 VKSGIQGKIP TNQLAELWLK LIDEVIEDTR YTLPVTEGKA NVTVLDTQIR KLRLRFLSQI 720
  721 HEAALRMRSE ATDVKSTLLE IEEWLDKLMQ LTEEPQNSMP DIIIWMIRGE KRLAYARIPA 780
  781 HQVLYSTSGG NASGKYCGKT QTILLKYPQE KNNGPKVPVE LRVNIWLGLS AVEKKFNSFA 840
  841 EGTFTVFAEM YENQALVFGK WGTSGLVGRH KFSDVTGKIK LKREFFLPPK GWEWEGDWVV 900
  901 DPERSLLTEA DAGHTEFTDE VYQNETRYPG GEWKQAEDTY TDANGDKAAS PNEMTCPPGW 960
  961 EWEDDAWTYD INRAVDEKGW EYGITIPPDN KPKSWVAAEK MYHTHRRRRL VRKRKKDLTQ1020
 1021 TASSTARAME ELEDREGWEY ASLIGWKFHW KQRSSDTFRR RRWRRKMAPS ETHGAAAIFK1080
 1081 LEGALGADTT EDGDEKSLEK QKHSATTVFG ANTPIVSCNF DRVYIYHLRC YIYQARNLMA1140
 1141 LDKDSFSDPY AHVSFLHRSK TTEIIHSTLN PTWDQTIIFD DVEIFGEPQT VLQNPPKVII1200
 1201 ELFDSDQVGK DEFLGRSICS PLVKLNSETD TTPKLLWHPV MNGDKACGDV LVTAELILRN1260
 1261 KDGSNLPILP SQRAPNLYMV PQGIRPVVQL TAIEILAWGL RNMKNYQMAS ITSPSLVVEC1320
 1321 GGERVESVVI KSLKKTPNFP SSVLFMKVFL PKEELYMPPL VIKVIDHRQF GRKPVVGQCT1380
 1381 IDHLDRFRCD PYAGKEDIVP QLKASLMSAP PCRDVIIEIE DTKPLLASKL SEKEEEIVDW1440
 1441 WSKFYASSGE HEKCGQYIQK GYSKLKIYDC ELEDVADFEG LTDFSDTFKL YRGKSDENED1500
 1501 PSVVGEFKGS FRIYPLPDDP SVPAPPRQFR ELPDSVPQEC TVRIYIVQGL QLQPQDNNGL1560
 1561 CDPYIKITLG KKVIEDRDHY IPNTINPVFG RMYELSCYLP QEKDLKISVY DYDTFTRDEK1620
 1621 VGETTIDLEN RFLSRFGSHC GIPEQYCVSG VNTWRDQLRP TQLLQNVARF KGFPPPVLSE1680
 1681 DGSRIQYGGR DYHLDEFEAN KILHQHLGAP EERLALHILR TQGLVPEHVE TRTLHSTFQP1740
 1741 NISQGKLQMW VDVFPKSLGP PGPPFNITPR KAKTYYLRVI IWNTRDVILD EKSITGEDMS1800
 1801 DIYVKGWISG SEENKQKTDV HYRSLDGEGN FNWRFVFPFD YLPAEQLCIV AKKEHFWSID1860
 1861 QTEFRVPPRL IIQIWDNDKF SLDDYLGFLE LDLHRTIIPA KTSEKCSLDM IPDLKAMDPL1920
 1921 KAKTASLFEQ KSMKGWWPCY ADKDGSRVMA GKVEMTLEVL NEREADERPA GKGRSEPNMN1980
 1981 PKLDPPNRPE TSFLWFTNPC KTMRFIVWRR FKWVIIGLLL LLILLLFVAV LLYSLPNYLS2040
 2041 MKIVRPNA

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle