YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109463752, gi...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.82
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLLLLLILNL SSQLHHIAAL FTVTAPKEVY TVDFGSSVSL ECDFDRRECT ELEGIRASLQ  60
   61 KVENDTSSQS QRATLLEELL PLGKASFHIP SVQVRDSGQY RCLVICGAAW DYKYLTVKVK 120
  121 ASYVRIDTGI LEVPGTGEVQ LICQARGYPL AEVSWQNVSV PANTSHIRTP EGLYQVTSVL 180
  181 RLKPQPNRNF SCMFWNAHMK ELTSAIIDPL SWMEPKVPRT RSLHAFIPAC TVALIFLATV 240
  241 IAQRKRLWGK LYSRKRSPHP YLSLLPQGDT QTPPSG

Type	Start	End	Confidence
Signal Peptide	1	19	0.85
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	222	0.97
Transmembrane Helix	223	242	0.91
Cytoplasmic	243	276	0.89