YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109459954, gi...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLSCQKKKI VKIGVNGFGC IGCLVTRAAF SSASGKVDIV AINNLFIDLN YMVYMLQYDS  60
   61 THGKFNGTVK AENAKLVINR KPITIFQDQD PTNIKWGDAG TEYVMESTSV FTTMEKAGTH 120
  121 LNGGTKRVII SIPLADAPMF VMSMNHEKYD NSLKIVSNAS CTTNCLALLA KVIYGNFDIM 180
  181 EGLMTTIHAI TATQKNVDGP SGKLWHDGHG AKQNIIPAST GAVKAVGKVI PELNRKLTGM 240
  241 AFHVPTTNVS IVDLICHLEK PAKCDNIKKV VKQASEGSLK GILGYSEDQV VSCDFNSNSH 300
  301 SSTFDSWAGI ALNDNFVKLI SWYDNEYAYS NRVVKLMSYM ASKE

Type	Start	End	Confidence
Signal Peptide	1	33	0.85
N-region	1	24
H-region	25	30
C-region	31	33
Cleavage Site	33	34
Non-Cytoplasmic	34	344	0.99