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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|109463670
Protein type: Transmembrane
Type Confidence: 0.93
Topology Confidence: 0.88
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQIFHGLANL DLSGHIQKDN KSGVKSDDCP RALGAGGSAA SGRASTGSPV QQRGRPAAAC  60
   61 ARASRLCGAP GPKRSKRQTK SPRAEPGEPA AKAPVPLRRF PCQPGSDRLT TPPAQSPSPR 120
  121 YPLPQGWSKS LRGARSSAPF LGSLPPTDRS RLRAPPAQAG EVSCARRLAR EPAGGRKRRS 180
  181 AGTMDWGWGS RCCRPGRRDL LCVLALLAGC LLPVCRTRVY TNHWAVKIAG GFAEADRIAS 240
  241 KYGFINVGQI GALKDYYHFY HSRTIKRSVL SSRGTHSFIS MEPKVEWIQQ QVVKKRTKRD 300
  301 YDLSRAQSTY FNDPKWPSMW YMHCSDNTHP CQSDMNIEGA WKRGYTGKNI VVTILDDGIE 360
  361 RTHPDLMQNY DALASCDVNG NDLDPMPRYD ASNENKHGTR CAGEVAATAN NSHCTVGIAF 420
  421 NAKIGGVRML DGDVTDMVEA KSVSYNPQHV HIYSASWGPD DDGKTVDGPA PLTRQAFENG 480
  481 VRMGRRGLGS VFVWASGNGG RSKDHCSCDG YTNSIYTISI SSTAESGKKP WYLEECSSTL 540
  541 ATTYSSGESY DKKIITTDLR QRCTDNHTGT SASAPMAAGI IALALEANPF LTWRDVQHVI 600
  601 VRTSRAGHLN ANDWKTNAAG FKVSHLYGFG LMDAEAMVME AEKWTTVPQQ HVCVESTDRQ 660
  661 IKTIRPNSAV RSIYKASGCS DNPNHHVNYL EHVVVRITIT HPRRGDLAIY LTSPSGTRSQ 720
  721 LLANRLFDHS MEGFKNWEFM TIHCWGERAA GDWVLEVYDT PSQLRNFKTP GKLKEWSLVL 780
  781 YGTSVQPYSP TNEFPKVERF RYSRVEDPTD DYGAEDYAGP CDPECSEVGC DGPGPDHCTD 840
  841 CLHYHYKLKN NTRICVSSCP PGHFHADKKR CRKCAPNCES CFGSHADQCL SCKYGYFLNE 900
  901 ETSSCVAQCP EGSYQDIKKN ICGKCSENCK TCTGFHNCTE CKGGLSLQGS RCSVTCEDGQ 960
  961 FFSGHDCQPC HRFCATCAGA GADGCINCTE GYVMEEGRCV QSCSVSYYLD HSLEGGYKSC1020
 1021 KRCDNSCLTC NGPGFKNCSS CPSGYLLDLG MCQMGAICKD GEYIDEQGHC QICDASCAKC1080
 1081 WGPTQDDCIS CPITRVFDDG RCVMNCPSWK FELKKQCHPC HHTCQGCQGS GPSNCTSCKA1140
 1141 DKHGQEYFLY KGECLENCPM GHYPAKGHAC LPCPDNCELC YNPHVCSRCM SGYVIVPTNH1200
 1201 TCQKLECRQG EFQDSEYGEC MPCEEGCVGC TVDDPGACTS CATGYYMFER HCYKACPEKT1260
 1261 FGEKWECKAC GTNCGSCDQH ECYWCEEGFF LSSGSCVQDC DPGFYGDQEL GECKPCHRAC1320
 1321 ETCTGLGYNQ CSSCPEGLQL WHGTCIWPTW PHVEGKVWNE AVPTEKPSLV RSLPQDRRKW1380
 1381 KVQIKRDATR QYQPCHSSCK TCNGSLCTSC PAGTYLWLQA CVPSCPQGTW LSVRSSSCEK1440
 1441 CAEGCASCSG DDLCQRCLSQ PSNTLLLHEG RCYHSCPEGF YAKDGVCEHC SSPCKTCKGN1500
 1501 ATSCHSCEGD FVLDHGVCWE TCPEKHVAVE GVCKHCPERC QDCIHEKTCK ECMPDFFLYN1560
 1561 DMCHHSCPKN FYPDMRQCVP CHKNCLGCNG PKEDDCKACA DTSKVLHNGL CLDECPKGTY1620
 1621 KDEVNDECRD CPESCLICSS AWTCLTCREG FTVVQDVCTA PKECAAIEYW DVGSHRCQPC1680
 1681 HRKCSRCSGP SENQCYTCPR ETFLLNTTCV KECPEGYHTD KDSHQCVPCH SSCRTCEGPH1740
 1741 SMQCLSCRPG WFQLGKECLL QCRDGYYGES TSGRCEKCDK SCKTCRGPQP TDCQSCDTFF1800
 1801 FLLRSKGQCH LACPEHYYAD QHAQTCERCH PTCDKCSGKE AWNCLSCVWS YHLLKGICTP1860
 1861 ECIVGEYRDG KGENFNCKKC HESCMECKGP GSKNCTGCSA GLLLQMDDSR CLRCCNASHP1920
 1921 HRSQDCCDCQ SSTDECILPA SDDTVFHEHT KTALLVTSGA MLLLLLGAAV VVWRKSRSQP1980
 1981 VAKGRYEKLA EPTVSYSSYR SSYLDEDQVI EYRDRDYDED DEDDIVYMGQ DGTVYRKFKY2040
 2041 GLLDEAEDDE LEYDDESYSY Q

YRC Informatics Platform - Version 3.0
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